LOC122347442 (sgcz,LOC107656592,LOC107702328)


Basic Information

Item Value
gene id LOC122347442
gene name sgcz,LOC107656592,LOC107702328
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056699.1
NCBI id CM032068.1
chromosome length 31761587
location 9407160 ~ 9630558 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043242763.1
ATAACTCGCAGGACAGTTTATTTTTTGAGTGATGAAAAGGACCTGCTCGCATTTCCACGCAGAAGACTAAGGGGACTGTGCAAGTCAACTGGCTAGTCTGGATAGTCACCGCGCCGCAAAAGACAGATACATTCACCCACAATCCACTCGAGGAAGATcttcccccttttttttcttccatccCTCCCTCCTCAGACTCCCTCTGCCAGACACAGAGCCCGTATTCAGAGCACCGGGACTCGGCTGGAGGAGCGCGTTTGGATACGGGAGGTTTCTGGAGATCACCAAGTAGGGCAGCGGCGGAGTGCGCCCTGTCTAATCAAacgatcaatcaatcaatcaataaatcggCCGGATCGCAAGCGAGGAGCCGACAGCCTCCTTCTCTTCCGCCTGCTCGAATCGAACCGATTTCGTTAAATGTGCCGCAAAAGGTTGACGTGAAAGACCGATCAACCAGGCTCGCTGCAAATGTGCCGTTCGCGCGCTCAACGCTCTCAATGACAACACGGTCTCTCACTAACGGAAACACTTTTGCTATTGGAGAGGAAAACGGAGAGGGACACGCGAGTCTGTTTATGTCACGTTACCGCTGTCGGGACACTCTGAGTGACTAGTTTAGGTTTTAAATAGGCTATTGAATAGTTGAGGCTGTCGCCGGAGTCGTGATCAGCGGGAATGAGACTGAGGGAATCCACCGCAGCTCGGAGAACTGGGCTGGCTTTCGCTCGGGAACTACAAGGCTAGATATACAACTTTTGTGTTAGACTTTATCTTTCGATATGGAGCGATCGGCATCGCTGGACATCGAGGCGCTGAAGATGACTCAGGAGCAGTACATCCTGGCATCTCAGCCAAACCCCCTCCAAAGGCCGGGATGTGCTACTGTGTACCCAGTGGGGATTTATGGCTGGCGAAAGCGCtgtctttatttcttcatcCTTCTCCTCCTTGTCACCATGATTGTCAACCTAGCCTTGACCATCTGGATTTTAAAGGTCATGAACTTCACCGTGGATGGCATGGGAAATCTCCGTGTAACCAAAGAGGGCATCAGATTAGAGGGAGTGTCGGAGTTCCTCCTTCCACTATATGTGAAAGAGATCAAATCCAGACGGgataGTCCTCTGGTCTTACAGTCAGACCGCAATGTGACGGTGAATGCACGAAATAACCTTGGCCAGCTGACAGGACAGCTCACTGTGGgTTCTGAGATGGTAGAAGCCCAGTGTCAGCGGTTCGAGGTGAGAAGTAGTGATGGCGAGAGAGTTCTCTTCTCTGCTGATGAAGAGGAGATCAGTATTGGCACAGATAAACTGAGGGTCACAGgCAACGAGGGAGTTGTGTTTAGTCATTCGGTGGAAACGCCACACGTTCGTGCTGAACCATTCCAAGACCTGAAGCTAGAGTCCCCGACGAGGACACTGACACTGGAGGCTCCAAAAGGCGTTGAAGTCAATGCAGGAGTAGGGGAATTCAAAGCTTCTTGTAGGAAAGATCTTACTTTAGAGTCTTCAGAAGGAGAGATCTTTCTAAACGCAAACTCAATCCGTCTTGGAAATCTTCCACACGGGAGCGTGGACCCTTTGCTCGGTCCAGGGACCACGTACCCCAAACAGACTGTGTACGAGGTGTGCGTATGCCCCAGCGGCAAGCTGTATCTGTCTCCTGCAGAGAGCTCTTCCACCTGCCAGACCACCAacagtgtgtgtctctggagcTGAGAAAGGTGGGTGGGCCATGGACCACCCAGCACCAGAAAGGCCTTCCTTTACCTTTCCACTCCTGCTCCTTCCCTTCCTCCTCCTTCTCtgatctcttttctttctcaatACATATCTGTTACGCCTTTCTTTTATCCACCTATTCATCCAGGTGTCCATATCTCCATTCATTGGTCTGCCTagtatccatccatccgtccatccatccatccattccttcatctatctatctatctatctatctatctatctatctatctatctatctatctatctatctatctatctatctatctatctaatctgtCTGTCTGGCTAGTTATCTATTGTAAAATCTTATGTACGCTCAGTTTGTCTGTCTATCATGAAagcatctctttctttctctctctctctgtctgtctgcctttCTAGCAAGTGTTAGTTAgctttttatcataaaaaacaTGTGTCTGTCATTTCGTCTGTCTAGTTATATAGCTAGcttttaatcataaaaacatctgCCTGTCTGTCAGTCTAGCTAGTTAGCCTTTTATCATGTTAGCATATGTCTGTGTGTCCGTCAGTCTGTTTATCTAGCTGGTTAgctatttttattgtcatttttgttttcataaaaacctctatctgtctatctttctgtctgtctgtctgtctgtcagtcagccAGTCAGTCTGTTTGTCTAGCtagttttttctctctctctcattaaaGTATCTGTCTGTCAGTGGGTCTGTCTGTATAGCTATCTACTGTAGCTAGCTAGCTGTATATCACGAAAGCATTTGTCTGTCTAACAGTCAAACTGTCTAGATATCTAGCTAGCCTACaaatttctgtctgtctgtctatctgtctatccatccttcGGTCTGTCTGTCAGTCCATCACCATTTCTTTTCCACATTGACCGTATAACATTCTATcccttttttgtcatttttctttgtcttcctctttctctcgtCTATTATCTTCCTCTTTCAATTTATCCTCTTTCCCATCTTCCTCTTCCCCTTTGTCCTCTCAAGCAGAAATCAGGAATCATTAGGCGTATCTTGGCTCGGTTGAAGCTGCATCTTCCCAATCTGTAAATGGAGCAGaaactcttgtttttttttttttgtgttttgttcctcttttttttgtatgagcGTCTGACTCAGTGGAGGATTGTGAATGTGTGCCGGGACGCTGGACTGCACTCGTGAATGAGCACACACACGGCGACCTGCAAACGAGCGTGTGTTTTTCTAAAGAAGATACAAAGGTGCCTTTGCTACTGTTAGTAAAGCACATCACCTGCTACTCTCCCTCCACGTGCAGTAAGACTAAACTCCGCTAGGAAAACTGACCGAACGGACCCTCTCCTCTCTTTTAGTTCCTTCATCAAAAAGACACTAtgataaacagaaaagaaaacaaaaacttactTTCCTCTTGgatgtttcttttttggaaaaaaagcacAAGATTATGCCATGTAtataacaacattaataaataataataaaaagagaaagtttattttaagaattttgtATTCAAGAATGCTTgataacatttctttttttattgtttaggtCTCATGGACATGTTTACATGTACTATGGTgagttaatgttaaaaataatattgtttttcttttttcttcttctttttccttctcattttttttttatatatactctTGACCTGTTATCAACCAAATTCATTTGTTGGATTGTATTTAGTTCCTAACTAAAATTGATCCTGCCAGTCAAAAAGAGGTGCCGTAATCTTTTCCCAACTCTATggctttgtattttatttgatatcattgtgtgtgtgtgtgtgtgtgtgtcttttttatTCCCTCCACATGATGTAGTGTAAAAATCAATACTGCAAGCTTATTATTAATCATCATTGTtacattatttactgttttcGGTGTTTCGGACCATGGGCCACTGCACTTgggtaaattaaaatatgatttagagCGTTGTTACTGCAAAAAGATTTTAGAGTGAATGAAAAGTAAACTGCCAATGTGGAATAACCTTTCATAGTTTTTGACCCATTTGGaattatttgcatttgaaaaaatgtattaatgcaaGAATAGCtcctaaaatataatttcatagtAATAAATTAGGTGGTAATCgaaaacagttttattaaataagcaaCATGCACAAAATTAGGAGccattcatgtaaaaaaaatctaattccaaAGAGGTTATCACACTTATTGTACAGCAGTAATCCAATAACACTTGTGTTTATGGCTGTCATCAACTTCATTATGACACATGAAACATTGTCGTTTGAAAATTTTGACAGAAGTTTTCTTCACTTGCGAGAGACATAACAAAGTATGTTTGGCAATAGGAGTTAAAAGgtgaaaaataaagtgattaTGCCTGTAATAACTGAAGTATACCTCtaagttcaaaaaaaaaaagaaatctaggAAAGAAGATATCCACATATGCCCTCATAAATGTCCAAAATATAGAGGAAACTCTAGAGTAACACAGAACGGGCTAATGTACAGTAGTCTGAGGTGCTTAGcatcaaaataactgtttatttatttttgtgtttacgTTCTGTAGGAGAGAAGATTTcttaagagaaaaacaaagatatattttcttataaattCTATGCAATGTGTTTGTAAGATTGCTGTGAGGTTGGAGAATTATTCAGTTATATAAGAGGTCAAAAATAATGTCCTAGATTTTCTTTTCATCCAGTATTACGACACTCAAATTAAACTGGCTCATGAAATGagtttgaaaataattaaaaataaacatgaaatgatgaacacatgcaaatatgtttgtttgggatattaaatatctttatttgggAGATGAAACCCAGGCACTGTCTTTCTCTTCGTCCGCTTCCCATGCTGTTTCTCACCGATGTCAGAGTCCATGAGGAgttgatttattttctgtgaAGAAAAGTAAGGACATATGTCGCTACATCTCCCTGTCtctgtctttttatttctttatttgctgTCCATTTTCTATCAATGTTTGACTAGAATGGAAAGAGGCAGGCAGAGGCAGTCTTTGAGGCTTTCGAATCAAATTTACCATGAAATAGAACATCTTCATAAAAGGATGAGGTCAGTGTTTTGGTTAGGACTCACTCCTCTGGCACCTCTACTCTCATTTGGAAAAGCAGAGAGGTCTTATAAAGCTTATGAACTCTGAGAGAGAAGCTAAACATCTGAGGAGAGCGAAGGCCATAAAAAACGATTCATTCTTCACTGTATTTTGTGCTCATAAATTTTGGCCCACTATTAAAAACGTGTTTTGAGTGTAAAACAAATACccttctggggttttttttgcttgtttgttttttttttaaacacatgtacttttttttcagtcgCTGCACTTTATTTACCctttacagtatgtgttttaaaatgagatttgaaGGTGAAATATGATTAAATCTGTTTCCAAGGGCTTTGAAAACAAACTTTGTTGAGTCTTGAGATACAGGTTCGTTACAAATTCAGTGTGAATTTCATACTTATTGTTTAATACCATCTGTACTACAGTGTTTggattttgaaaatgattaaaattaaaaaaaaaaaaaaagaagaaaagaaaatagctTTCCTAAACAATGAATAACTTGTCTAGGACAAAACAGCTTGTTCGCTGAGTTCACTTGGATTGAATAGCGTCTAAGAAGATTGCCTGAATTTAATTGTAGTTGTATTCTACtctaaataatgaatgtttatgAGACTTCTCATTGGCATTCAGAAGGGAGAAACATGTTGAATAAAGAGTCGAGAAATAGATGGACAACCCACAGGAGGCAAATTACTGAAATcaaatgcgcacacacacaaacaaacactttacaGTTTTCACTTCACTGTATTACTGTTATAgctctctttctttatttctttcttcatgtCCCTATGTCTTCAAGGTCATTTCCACCTTagttttttcagtctttttttttttttttttttttactgagctAACACCCTGAGACTTGAACAACGTGGACGAAAATGAGTGCGAATGATAGTCTTTACAATGTCACACACTGCCCTATATCGTGTATTTTTTCACAGCTCACACCTTGCAACATTCTTCTATAGAGACTGCGTCTACTAAAAGTAAGAAGGATGTTTTGTCTGCTGAACAATCAGTGCGTTGTTAAACAACGATGTACAATGCATCGAACAGGCTGCACTTCTATCCCTCACATCGTGCTTTCATTtcggtaaaagaaaaaaaaagtcactgttGCATGAGGTTTTTCAGTGGAAAAACTTTGACGTGTTTGTAAACCACCCACAATTCACTTCACGCTGTAgagttatgtaaaaaaaaaaaaaaaaaacaacacatactTTCTATGTAAATGACCCTAATTATTGCAGCTTATTCACAAAACTGTTTACCTGATGCAATACATGTGCTGTTACTGCCTGCAaagactttttgtttgtttttattttctgttgatcATGACAGCATTCATTTTTCAAACGATGATCGAATGATGTAGGACACCATTAAAACCGGGCGTATATCCAGATATCGAGGGTAGATAAACGTGCTTCTTGcgttttcaaaaaaagtccatTTTAATGTCTGGCTTGCCAATGTTGTAAAATTTctacaatttaaaagtttaagttttacatttttttaaagctttaattgtttatttat

Function

symbol description
sgcz Predicted to be involved in cardiac muscle tissue development and heart contraction. Predicted to be located in plasma membrane. Predicted to be part of sarcoglycan complex. Predicted to be active in sarcolemma.

NR:

description
zeta-sarcoglycan

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043242763.1 True 6463 mRNA 0.39 8 9407160 9630558

Neighbor

gene id symbol gene type direction distance location
dlc1 dlc1,LOC107742489,LOC107656601,LOC107702327,LOC107562932,LOC107750042,LOC107565476 coding downstream 50138 9267535 ~ 9357022 (-)
LOC122353124 slc34a2a,LOC107657019,LOC107742514,LOC107565308,LOC107714203,LOC107562975 coding downstream 464295 8936745 ~ 8942865 (-)
LOC122353120 rbpja,LOC107563830,LOC107742494,LOC107702317,LOC107562987 coding downstream 474596 8927021 ~ 8932564 (-)
LOC122345830 stim2a,LOC107656659,LOC107742493,LOC107563819,LOC107714208,LOC107562986,LOC107702263 coding downstream 484569 8914224 ~ 8922591 (-)
LOC122351065 NA coding downstream 517349 8887854 ~ 8889811 (-)
fgf20a fgf20a,fgf20,LOC107747399,LOC107721420,LOC107702330,LOC107657011,LOC107562923,LOC106602193 coding upstream 135989 9766547 ~ 9769095 (-)
mtmr7b mtmr7b,LOC107562927,LOC107721424,LOC107656498,LOC107702332,LOC107747392 coding upstream 175756 9806314 ~ 9821101 (-)
asah1b asah1b,asah1,LOC107747389,LOC107721418,LOC107656476,LOC107562924 coding upstream 258186 9888744 ~ 9893057 (-)
frg1 frg1,LOC107656998,LOC107721419,LOC107702291,LOC107554393,LOC107747397 coding upstream 262463 9893021 ~ 9898355 (-)
acsl1a acsl1a,LOC107562746,LOC107702334,LOC107746029,LOC107656816 coding upstream 711270 10341828 ~ 10361688 (-)
G2038 NA non-coding downstream 392531 8708219 ~ 9014629 (-)
G2034 NA non-coding downstream 401800 8700429 ~ 9005360 (-)
LOC122351897 NA non-coding downstream 512598 8893620 ~ 8894562 (-)
G2033 NA non-coding downstream 709759 8695872 ~ 8697401 (-)
G2016 NA non-coding downstream 736356 8669413 ~ 8670804 (-)
G2138 NA non-coding upstream 49338 9679896 ~ 9693438 (-)
G2174 LOC107747394,LOC107562929,LOC107721426 non-coding upstream 156756 9787314 ~ 9792467 (-)
G2286 NA non-coding upstream 626092 10256650 ~ 10256887 (-)
G2292 fat1,fat1a,LOC107562748 non-coding upstream 676412 10306970 ~ 10307238 (-)
G2293 NA non-coding upstream 676946 10307504 ~ 10307715 (-)
LOC122351550 LOC107656542,LOC107747394,LOC107562929,LOC107721426,LOC107707229,LOC107658053,LOC107751937,LOC107661411 other downstream 608805 8779212 ~ 8798355 (-)
G1926 NA other downstream 799365 8556040 ~ 8607795 (-)
mgarpb LOC107692675,LOC107742504,LOC107714221,LOC107563974,LOC107562972 other downstream 906948 8492144 ~ 8500212 (-)
dmd dmd,LOC107692624,LOC107723158,LOC107665951,LOC107758879,LOC107565081 other downstream 2111331 7204004 ~ 7295829 (-)
G1642 NA other downstream 2237138 7125642 ~ 7170022 (-)
G2302 slc25a4,LOC107656452,LOC107562743 other upstream 726623 10357181 ~ 10401686 (-)
LOC122347930 dnah6,LOC106610484 other upstream 1104412 10734970 ~ 10799609 (-)
LOC122347618 kdm4c,LOC107655842,LOC107709452,LOC107702398,LOC107548355,LOC107750465,LOC107570226 other upstream 1176011 10806569 ~ 10814075 (-)
G2382 cpe,LOC107591555,LOC107745061,LOC107548348 other upstream 1323317 10953875 ~ 10981366 (-)
G2401 NA other upstream 1422596 11053154 ~ 11053941 (-)

Expression


Co-expression Network