RNA id: XM_043244320.1


Basic Information

Item Value
RNA id XM_043244320.1
length 3329
RNA type mRNA
GC content 0.41
exon number 9
gene id ubac2
representative False

Chromosome Information

Item Value
chromosome id NC_056699.1
NCBI id CM032068.1
chromosome length 31761587
location 16371488 ~ 16387107 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

TGTCTCCTGCGAGGTGCCGTCCTCAGTACCCTTTCCCCTTTCCCTCTCTCCTAGCGAGTTTTCCCTttaactgttttactgtttttacgttttaaatcCAGTGCCTTGGGTTCGGTCGTCTCGTTAGTCTTCTTAGCTACATCCTGCGTGTAAACTGGCGGGATGTTCACGTCCACCGGTTCGAGGGGGTTGTATAAAGCACCCCTGTCCAAGAGCTTGCTGCTGATCCCTACAGTCCTCGCCGTGCTGCTGACCGTGCTTCTGCCTCAGTACCAGGATGTGTTTCTATACAACCTCCAGGCTGTCAGGCAGGCCAAGCAGTTCTGGAGGCTGGTGAGTGGACGGCTCATCTGCTTGGACCTGAAAGACACTTTCTGCAGCAGTTTGCTCATTTATAATTTTCGTATTTTTGAAAGAAGGTTTGGCAGCCACAAATTTGCTtcctttctctttggagcgTGGATTCTTTCTGCTTTTGTGGACTTGCTGCTGACAGAGGCCCTGCGCTTCACGTTTGAACTTAAAGTGGATGTTCTTCCAGCTGGACTacTGGGCCCAGTCTTCGCTCTCTTTGTGCCTTTCTACAGCTCCATCCCACGTGTTCAGGTGACTCAGCTTCTCGGCCACGTCTCAATCACAAACAAGTCTCTGACATACATTGTGGGCGCACAGCTCCTGACCTCAAGTGCCTACATGTGGGTGGTTGCTTGCAGTGGATTAATTGCAGGCATGTTGTATTATAGTAATAAGTTGGCAGTCCAGAAGTTCATATGTGTGCCAAGATGGGCAGCCAGATGTGGTTCGGTGCTCCTAGAGCCGGTCTTCTCCGATTCTGAGCCCACCGCAGAGGCCCCGCTGGGGATGGGCGCTACTTTGGACATCCAGAGACAGCAGAGGATGGATATGTTGGACCAGCAACTGCTCCTGTCTCAGCTGGCACACCTCAGGAGAAATGCTCAGCAGCAACAGGCCCAGACGGGTCTCCTGAATTGGAACAGATTCTTCCCGACTCTAAGACACAGAGGACAGAACCGGCATCATGAGGGTCCCGAGCCACAGCACCCGCCGGATAACACACCTGTGGCTGAGGAGCAGGTCGCAAGATTAATGGAGATGGGTTTCTCAAGGATGGATGCCCAAGAAGCTCTCCGAGCCTCTAATAATGACATTAACATTGCAACAAACTTCTTGCTTCAGCACTAAGATGAAATAAATCGAAGGGTGACCGGGAGAGCAAGGAGAATGATCACTGAGTTGAAAGTACTTAAGAACACAACACTGGTGTCATTACTACACCTGCTGGAAGAAGAGCGTCGATACACAACCCACAGGAGCTGATGACGTCACTTCCTTTCTGACTAGACAGTGTGGCGCTCCTGCTGCCGTGTCTCGCAGTGCTACAAGGAGTTGACTTGCAGATGCAACCCTCTCTGCTCCACAGGACAGAGCCAACATGGTGGACATTTACACATTGTGTCTCAGGGCTCGTGCCATCTGGCATCGTCCTTGAACCTGCTTCATCTAATAATTAAGAATTCTATAATATATTGCTAAATTATTAAACCATTTGttgttcttaaaggaatagttcatccaaaaatgtagcCATTGTTCTCATGTTCCTAAGCTATATGGTTTTTCAGTCTtccatggaacacaaaagaggaTGTTTAGCAGAATGCCCTGGCTTCTCTTTTCCATATATAAGGTAGAGAGTGACTAGTGGCAGGTGAACTCCAAAATAAAGGTCTATACGATACTATAAAAGTAGTCCGTATGACATTTGTGGTTACTATATGTGAGGTAAAGTCACATTTCACTTTAACAGTTCAAAGTACAGGTTCTTGAATCTCAGAAGATCTGTGGCAGGGgccaaaattaaattttggtTTGTGCCTCAATTATGACTTCAGAGGCATATTACAGCTCTTTTTGGATGCTTTTTTGATAGACAGCTATTTGTCTTGTGGAAAAGAGCAGCctgaacattcttcaaaatctcTTATCGTCACAGCGTTCATAAGAGAAAGTAAGTCATATGgtttttggaatgacatgagaatgagtaaatgatgacaaaattatttttggatgaaatgttaattttttttaatttttttgtttggtcaAAACTTAAAAGGGCTAGTCAGCTGTATGGCAGTGTATTTAAAGTACACCTGGATTAAATGGATTCTTGAGTAGACCACTGACGCGTTTCATTCTGAATCAAAGCTAATGAAAGCACGAGGCGTAATGTTCGGTCAAAGCatcagatgtttttattattttaataatcaaattgTCGTTGTTATTATGTATTGACTTTGGTGTCTGGAAAGCTTAAAAAAGTACCATGACTTTTATAGTGGCATGatttaaaagaagaaacaagTGGACATTTCACGCCATAGTCATccaattgaaaatatttgttattttatgatgCTTAGAAAGTTTTTCTGCACAATGCAAATGGATAATATTCAGAGCATCtttatctttgtgtttgttAGAGAGTGGgacaaaacgtttttttttgttttttttttaacagcatgaTTTCTCTGTGGCACAAAAAGATAGgatgaaatattgtttaaacTCTCATTAAAGGGATAATAACAGTTTTGATTCCCGTAACTGGGATTAAAATCATATCTTTAAAGAACATatccatttaaatataaattatgaaattgttATCTGCTGATAAGATTATGTTCATGTGAATGTTCTCTTGTTTATTATGCAAAACAGtgtttgatttttgtgtttaatcaaGTGGTATTtcaattctaaaaaatatatatatatatatatatgtttatatagatTAATGTTCCGACTGCCAGAAAAACACTGGTCAACCCAAAAGCTAAGCACTCCTGCCActcttaagattttttttgttgagcatGATCTGTGGTCAAACAGTGGGTCTACATTGGGTGAGCAATTTCTTTATCATGGACTTTTGATGATAATGGTAAAAATAGTAATTGATGGCTGCTCTTTTCGTTTTGGGAAGATTGCATTTCACTGGCTTTACAAATTGAGATTTGAGTCTGAAATTCCGTATCTGTAACTCATTCTGTAAAACACGAGACTAGATTCGAATAATCACTCAACGTTCAGATGTTAGACAACAGAATACAATGTACAGCGACCCTGAACACACACCTGTACCTTTACTAAAATCTACCTCTTTTAAATCTGTTGTGCTGTCTGTTCATGTCACACAAATTTCAACGTGTTGTAGCTACTTTTAAACGATAGCTAAATGTCCAACTTCGACAGGTAAAAGCAATTAAACTGATCATGTCATGTAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU5481 lncRNA downstream 24181 16334202 ~ 16347307 (-) True igf2bp2b
TU5469 lncRNA downstream 64212 16306977 ~ 16307276 (-) True G3835
TU5466 lncRNA downstream 70815 16300404 ~ 16300673 (-) True G3832
TU5453 lncRNA downstream 107130 16264092 ~ 16264358 (-) True G3819
TU5363 lncRNA downstream 210894 16159692 ~ 16160594 (-) False march4l
TU5485 lncRNA upstream 59981 16447088 ~ 16448501 (-) True mzt1
TU5544 lncRNA upstream 124446 16511553 ~ 16513592 (-) True G3890
TU5700 lncRNA upstream 358078 16745185 ~ 16763080 (-) True G3971
TU5715 lncRNA upstream 369727 16756834 ~ 16758913 (-) True G3975
TU5716 lncRNA upstream 373069 16760176 ~ 16761139 (-) True G3976
XM_043235354.1 mRNA downstream 12463 16338708 ~ 16359025 (-) False igf2bp2b
XM_043247638.1 mRNA downstream 49896 16309009 ~ 16321592 (-) True c1h3orf70
XM_043240150.1 mRNA downstream 173225 16159887 ~ 16198263 (-) True march4l
XM_043246241.1 mRNA downstream 297568 16070962 ~ 16073920 (-) True alg11
XM_043246259.1 mRNA downstream 302193 16066727 ~ 16069295 (-) True spp2
XM_043248509.1 mRNA upstream 6430 16393537 ~ 16435858 (-) False dachc
XM_043248498.1 mRNA upstream 6430 16393537 ~ 16435853 (-) True dachc
XM_043246754.1 mRNA upstream 60043 16447150 ~ 16448519 (-) False mzt1
XM_043248161.1 mRNA upstream 66656 16453763 ~ 16464140 (-) True dis3
XM_043231225.1 mRNA upstream 91435 16478542 ~ 16480216 (-) True dlx2b
XR_006251556.1 other downstream 297568 16069177 ~ 16073920 (-) False alg11
TU5142 other downstream 1140602 15230539 ~ 15230886 (-) True G3571
TU5072 other downstream 1341868 15020642 ~ 15029620 (-) True G3515
TU5081 other downstream 1446125 14925085 ~ 14925363 (-) True G3522
TU5035 other downstream 1622513 14746829 ~ 14748975 (-) True G3491
XR_006250498.1 other upstream 1428717 17815824 ~ 17880417 (-) False znf827
TU6528 other upstream 3148865 19535972 ~ 19539146 (-) True cdk2ap2
unassigned_transcript_102 other upstream 3709848 20096955 ~ 20097026 (-) True trnae-cuc_3
unassigned_transcript_104 other upstream 3725643 20112750 ~ 20112821 (-) True trnam-cau
unassigned_transcript_105 other upstream 3726035 20113142 ~ 20113213 (-) True trnae-cuc_4

Expression Profile