RNA id: XM_043252019.1


Basic Information

Item Value
RNA id XM_043252019.1
length 4937
RNA type mRNA
GC content 0.43
exon number 8
gene id rargb
representative False

Chromosome Information

Item Value
chromosome id NC_056709.1
NCBI id CM032078.1
chromosome length 24513629
location 1485707 ~ 1517963 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

GCGAGTGAAACAGCGCAGGTTGTCGAGTCCAGTATGTTAGCTGACACTTAAGAGTCTTGACAGTCAGGCTGAGTTTGACAAAGCTCAAGAACTCGACAGAGAGGAGGGGTGATGGTCAGCGCAGAGCTGCGCAGGAGCCGCTCGACTCGACGAAGAACTGCTGCGGAAAAGTTCAGGCTGCAGGAGAGAAGCTGCTGGCTCCGGTGACAGCCGTACCTGAAGTCCTCCAGACTTTCTTTGGCAGGAGTTGCAGAGTGACTGGGATACTCCAGACTCTGCAGCGTTGTTGTTGGTCGTCGTCTACCGCGTTGCTTAACCGTATCTGTCGTTGACAAGCGGCAGAGAACATCTGGGACGGAGTTTGAGTTCTTGGCGAGGGCTGGACATCATGTTTGACTGTGTGGAGGCTCTCGGGGTAGGGGCAAGACCCCTCTTTGACGTATCCGCTCAGAGTTCATGCATGCTCAGGAAAGCAAGCTCCTTCTTCCCTGGCCTAGAACCTTTCTCATGGAGCAACAACACTAGCCTGCAGTCGGTGGAAACCCAGAGCACAAGCTCAGAGGAGATGGTTCCCAGTTCTCCTTCTCCACCCCCTCCTCCTCGGGTCTATAAACCCTGCTTTGTGTGCCAGGACAAATCTTCTGGCTACCATTATGGAGTCAGCTCTTGTGAGGGCTGCAAGGGTTTTTTCCGTCGCAGTATCCAGAAGAACATGGTGTACACCTGCCACAGAGACAAAAACTGCCAGATCAACAAGGTGACAAGGAACCGCTGTCAGTACTGCCGGCTGCAGAAGTGCTTTGAGGTCGGCATGTCTAAGGAAGCGGTCCGGAATGACAGgaataagaaaaagaaggaCATAAAAGAGGAGGTGGTTCTTCCAGAAAGCTACGAGCTGAGTGGAGAACTGGAAGAACTGGTTAATAAAGTCAGCAAAGCGCACAGGGAAACCTTCCCTTCTCTCTGTCAGCTCGGGAAATACACGACTaatTCCAGTGCGGATCACAGGGTGCAGCTGGATCTTGGACTGTGGGATAAGTTCAGCGAGCTCTCCACAAAGTGCATTATAAAGATTGTGGAGTTTGCCAAACGTCTGCCAGGCTTTACGTCACTCACCATCGCAGACCAGATCACCTTACTGAAATCTGCCTGCCTTGACATACTgATGTTACGGATTTGTACTCGCTACACACCAGAGCAGGATACTATGACCTTTTCAGATGGACTGACCCTCAACAGGACACAGATGCACAACGCTGGTTTCGGGCCTCTCACAGACCTGGTGTTTGCTTTCGCTGGACAGCTCCTGCCCCTGGAGATGGACGACACAGAGACAGGGCTCCTGAGCGCCATCTGCCTCATCTGCGGAGATCGCATGGACCTGGAGGAACCTCATCGGGTGGACCAGCTGCAGGAACCTCTGCTCGAGGCGTTAAAGATCTACGCTCGGCGGAGACGCCCCAACAAACCTCACATGTTCCCACGAATGTTGATGAAGGTCACTGACCTCCGAGGCATAAGCACTAAAGgagcAGAGCGAGCCATCACTCTAAAGATGGAGATCCCGGGACCCATGCCTCCTCTGATCAGAGAGATGCTGGAGAACCCTGAGGTCTTTGAGGAAAGCTCTGACTCGAAAGACACGGGTGCTTCCGCCCCCCCGCCGCCTCCCGCCATCCAGGCCATCAAACGTGAGAGGGATGAGGAATCTGCTCTGGAGGATGAAGAGGACGAGGACGACGAGTGTGCAGAGGAGGGACGGGAACGAGCAGGGGACAGCGAGGATGAGGAATGGGGACTCCTGCAAGTGGACATGGGCGGAGCTAGGAAGAGCGCGACAGGAAGAGCGCAGTGACCGGCCGCTGGAGGACAGTATGTATGCGGCTCTGACACGTGCAGATGACAGCGGACAACATTTGTATTCCAGACACCTGATCAGTCGACTCAAACAAAACCATTCAGTCAAGCAATTTCCAATAACGACTCTAAAAATAAGCTTCGTACGACAAAGAACATGCACAACTTTGCACATCTCGACTTTTCCAAAGCAGCAAAAAGAGAAAACCTTAAGACCATGCCAACGCCGTTACTTCAGACAGCGTTTCTCTAactgaaaagagagaaatgaaaaagaacgCAAGGCCCGAGAAAAATAAGCCATTGTGCCATATCTGGAAGTTACTTGttgtatgcatattttgtaCTTCATTTGGAGATGCTAAATATTTCAGGACGCATCCCAAAGCCTTGTTCTGTAagggaaacatttttaatggctGCATATGGATACATAATCAGGACTGATcaatgacaaaagaaaaaatgaacagCAAACAACCACACGCAGTAAATGACCAAATCCAAATAGCTTCTTTCAGTGTgttattatgtttgtttctgATGACATGCCTCTTTACGAAACACTTCAAATGCACAGCCCGATACATACAACTAAATTTGACACTTACACCAACTTTACGTTTCGGGCATTAGAAGatttataaattttaaagaTCGAAATGCACCACATTATTACAAATCGAACTTTTCACTCAGGGCAAATCAAGGACCAAAGGTGATCTACGTGTCTCATGCGTGCACTACACATATATTTAACCTTCAGCTATTCTGTATCATCAAGCAAGTTATATTAAAAGcctaaatgttaaatattctcTGGGATTTAGAAGAGTTGTGTGATTAGTTATTAAAAGCAATACCACACTATATTagataaaaaagaagaagagctcTAGAGCGTCAGCCGAGCATGAGCAGTGGTGTGCACTAACTCCTTTCGGTCTCTTAATAAcgaattattaatacattaatgtctTTGCAGATAGCgggaaaaatgttcaaattattcAGCTGTGTAATGAAATAGTTTCACAGGTCAGAGACCCAGCCAAAATGGACCGTGCATTGCTTTAATGGATTTTCatcaaactatttaataataataataataacattaaaactcAAATTTTATAACGATTTAATAAGAGTGATAAGATGAGAGTGGTCAttcatatcattaaaaaaactagtTAGAGTTATCTAATCCAGTAATCTAAGTAACTGAACTGGGgttttttaaactttgaagTGTGTTGGACCAccatgtattcatattttatataaatgtgctaATCGTTCGGTACAGCAGCCTTTATGTTACCGTGAAATGGTACTGAATGATTGCCAGGTACTTACTTAGTAGTTagtctttacattttaatccaGATGTGCTCATGAATAACGTGATATAACTGTGCTAACGGTTATTTGTAGGTTCTGGACGTTTTCGATTAGAAAGCACCCTACCAAATTGGTTCTATAGTGAGTTCTGTAGTCCATGTCATCCTTTTATCCGTTTCGCCCTGCTAAGGTCTGTGCACGCCACTGATGACAACGTTATACCTCCTCACATGACAGAACAGTGTTACCGAAACAACTCATACGCTCCTGACTGCTGCATATATAGCAAGATATTTGGGACAGAGCCATATGGTTTAAGGTTGTAAGCTGTGCGCATGCATACCTGTATACTATTCGCTTAAAACTGTAAAGATATCTCTTTTCTACTTTCATCTTTCTGCAAACCGTTTTATTTGAACGCCTCGGGAGGACATCTcagactttttttatgaaatattttcaaatataagcAAACACACCATAGGCTACACACgttcttttatttattgcttatttatcCTTGTCTTGTTCGATTTTTGTCCTGTCTGTAGCCAGCGATGCACGTTATGAACTGGGTTTTTGACGCTCTCATAATCCTCTCTCAGCGTACCGCCATCGTAATGATCAGAAAGGATGCGTGATTACCACGGAGTGTGCTGGATGAATCTGCAGTGATCATAAAGTCTAGCAGCTTCATGTAAATGCACTGATCCGGATACGTGACAGGGTAAATATGGCCTGCAGAGGCAGCAGTAAACCGTGGTACTCAGTTAGCTGATCTTTTAGAATATCTATACTTCCTTTCTCAGACCAGAGACAAAGTTGCAGTTTATGGTTTGGCATGTACGTGCTGTGTATGTTATCAGCAAGAAGACATGTCTCTGGAAATACGATAACAGTCCCTAGACTCTTCCAAGTCCCTTCAGCTctgataaatgtataaatgtagcAGTCCATGgcaaagtgtctttttttttttttttttttgtgaattatcagagcaattgttttttttttttgcttactcTCATTCCCCTCCGGTCTTGTAAATGAAACATGAGATATTGGATTCAATtagagacttttttttgtatcattctTAAATAGCGTTTATCTTTTGTGCTTGTATTTTGCCATTTATTGCAGTAGAGATCAACTTGTTCCttaatgaagttttttttttctttttttcctggtGGTTTGGAATATGTGTGTATTACCTGTTCgtttgtttgcattatttgttGATTAATTGGTGTCTTCTGGGTTTTAAAACATAGGAAAAATGGTGGCTCGTTTAAGGGTTAGAACTGCTAAGAAAAATGCTCAGAcaagtttgttttattgcatatttttaaatttgtattgcTCTTTTTTGTTCGTATCTTCTTCTTTGCGTTTTAAAAAggatacttatttttattattatttttttagcaatatgttttaaatataacagcatttaatgtttgtatttttttccccagccaTGCCTCGTCACCTCcccatttttaatttagcattttcttgTTTCTTGGTTACGTgccttgcaaaaaaaatttagtaataataataattgtttcaaATGCCTTGCACAACTTATGGAAATTGTTACAATAATTTTACTGTACATGCAAAGTCCTTAAGtattaatggttttaaatgATGTCCACTTAATGTCTGGCcacattcttttttaaaatactttgtttcgattttataaagaaatttcTGTT

Function

GO:

id name namespace
GO:0006357 regulation of transcription by RNA polymerase II biological_process
GO:0043401 steroid hormone mediated signaling pathway biological_process
GO:0048384 retinoic acid receptor signaling pathway biological_process
GO:0005634 nucleus cellular_component
GO:0043565 sequence-specific DNA binding molecular_function
GO:0003707 steroid hormone receptor activity molecular_function
GO:0008270 zinc ion binding molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU116121 lncRNA upstream 20577 1479174 ~ 1482149 (+) True G78468
TU116118 lncRNA upstream 31342 1469668 ~ 1471384 (+) True G78467
TU116102 lncRNA upstream 76962 1422733 ~ 1425764 (+) True G78455
TU116101 lncRNA upstream 80939 1420344 ~ 1421787 (+) False rbms2a
TU116026 lncRNA upstream 225599 1276515 ~ 1277127 (+) True G78400
TU116125 lncRNA downstream 4013 1521976 ~ 1524078 (+) True G78471
TU116126 lncRNA downstream 6384 1524347 ~ 1529157 (+) False G78472
TU116127 lncRNA downstream 6384 1524347 ~ 1529157 (+) True G78472
TU116144 lncRNA downstream 40897 1558860 ~ 1562656 (+) True G78484
TU116153 lncRNA downstream 54631 1572594 ~ 1575125 (+) True G78490
XM_043251428.1 mRNA upstream 53766 1419520 ~ 1448960 (+) False rbms2a
XM_043251430.1 mRNA upstream 53766 1420421 ~ 1448960 (+) True rbms2a
XM_043251429.1 mRNA upstream 53766 1436163 ~ 1448960 (+) False rbms2a
XM_043251829.1 mRNA upstream 87927 1308673 ~ 1414799 (+) True lrp1aa
XM_043252347.1 mRNA upstream 201927 1291109 ~ 1300799 (+) False LOC122354215
XM_043252502.1 mRNA downstream 18064 1536027 ~ 1538014 (+) True hoxc13b
XM_043251234.1 mRNA downstream 25659 1543622 ~ 1544764 (+) True hoxc6b
XM_043252503.1 mRNA downstream 83744 1601707 ~ 1618526 (+) True lima1b
XM_043252681.1 mRNA downstream 113864 1631827 ~ 1633704 (+) True igfbp6a
XM_043252526.1 mRNA downstream 117924 1635887 ~ 1643236 (+) True pip4k2cb
TU115960 other upstream 311005 1186866 ~ 1191721 (+) True LOC122353696
TU115925 other upstream 425327 1074744 ~ 1077399 (+) False cnbpb
TU115926 other upstream 425327 1074744 ~ 1077399 (+) False cnbpb
XR_006252083.1 other upstream 796176 603138 ~ 706550 (+) False atp2b2
TU115544 other upstream 907398 591328 ~ 595328 (+) False iars1
TU116164 other downstream 72781 1590744 ~ 1593125 (+) True G78500
TU116178 other downstream 126668 1644631 ~ 1726097 (+) True G78506
TU116166 other downstream 160274 1678237 ~ 1680177 (+) False nabp2
unassigned_transcript_1592 other downstream 342334 1860297 ~ 1860368 (+) True trnaq-uug_15
unassigned_transcript_1593 other downstream 342870 1860833 ~ 1860904 (+) True trnap-agg_14

Expression Profile