RNA id: TU116166



Basic Information


Item Value
RNA id TU116166
length 1129
RNA type TUCP
GC content 0.48
exon number 5
gene id nabp2
representative False

Chromosome Information


Item Value
chromosome id NC_056709.1
NCBI id CM032078.1
chromosome length 24513629
location 1678226 ~ 1681200 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence


ATAACGTCCGGCGCTGTAAGCGGTGCTTGAATGCCCACGTTAACTGcgatgattgacagctgtcaGAACATTTCGCGCCTCAATCAACACCGCGAGCAGCGAGTCCGTTCAAGGTCTTTCCCACAAAGCGTTGCAGATGACGAGAAATAATAGGCTActgttaaaacagaaaaggcAGCCTAGCTCAGTGCTAACCATTTTTGCAGGATTTGGGCAGAAGCAGAGCGACCATGAGCACAGAGACTCATGTGAAGGACATTAAACCTGGGCTCAAGAATCTCAATGTCATCTTCATCGTGCTGGAAACAGGACGAGTGACGAAGACCAAAGACGGTCACGAGGTGCGCACGTGTAAAGTGGCGGACAAGACGGGCAGCATCAGTATATCTGTTTGGGATGAAGTCGGAGGCCTCATCCAGGCTGGTGACATCATCAGACTTACCAAAGGTTATGCCTCcgtttttaaaggctgtttgaCGCTGTACACCGGAAGGGGAGGCGAACTGCAGAAGATCGGAGAGTACGttgattatatgattattaaGTTTTGCTGTAATGGTTTTCATGGCTGTAATATCAGTAAGTACAAATACAGTTACCTATATTAAATTGCATCTCGCCCCCCAAAATGTTTTGTAAGATTCTGCATGGTGTATTCAGAGGTGCCAAACTTTAGTGAGCCAAATCCAGAATATTTGGCCCAGATGAATAAAACGGTATGTCTCAATGGATTTCTGTCTTAATCATCAAATCGTTATTAAAAAGAAACGTTGAAGTGTTGGTCATGACGGTTCACTTTGTTCTTGTTACCCGTCAGGGACTGAATGACCAGAGCAGCGTAAACAGCAGCACTGCTGCCCCCGCAGGTAATGACACTCCCAATGGAAATGGGGTGAATTCTCAAGGCTCTGGCAACTCTACGAACCCGCAGCCGGGCGGCCGGGCGAGCAGTGGGAATGGGAACCGGTCGACGGCGAGTCCCGGCGTGGGAGGAGGCTCGGTCAGCAACGGCAAGGAGACGCGGCGGACGGTCAAAAGATGATTTCGGTCAATCGGGAGTCTGCATACACAGTAATAGTCATAACTTCCAGATGGTTGTGAGCAGCTGTTTGTCTCATTTGAGGACAGA

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU116194 lncRNA upstream 8542 1669022 ~ 1669695 (+) True G78517
TU116153 lncRNA upstream 103112 1572594 ~ 1575125 (+) True G78490
TU116144 lncRNA upstream 115581 1558860 ~ 1562656 (+) True G78484
TU116126 lncRNA upstream 149080 1524347 ~ 1529157 (+) False G78472
TU116127 lncRNA upstream 149080 1524347 ~ 1529157 (+) True G78472
TU116231 lncRNA downstream 86194 1766371 ~ 1766589 (+) True G78540
TU116382 lncRNA downstream 121174 1801351 ~ 1802313 (+) True G78625
TU116417 lncRNA downstream 218556 1898733 ~ 1899063 (+) True G78652
TU116442 lncRNA downstream 256683 1936860 ~ 1939086 (+) True G78674
TU116577 lncRNA downstream 808037 2488214 ~ 2488553 (+) True G78757
XM_043252585.1 mRNA upstream 13897 1662085 ~ 1664340 (+) True tp53rk
XM_043252584.1 mRNA upstream 21093 1650490 ~ 1657144 (+) True csnk2a4
XM_043252587.1 mRNA upstream 27897 1644898 ~ 1650340 (+) True ube2v1
XM_043252526.1 mRNA upstream 35001 1635887 ~ 1643236 (+) True pip4k2cb
XM_043252681.1 mRNA upstream 44533 1631827 ~ 1633704 (+) True igfbp6a
XM_043252412.1 mRNA downstream 20506 1700683 ~ 1703661 (+) True zgc:113184
XM_043252338.1 mRNA downstream 37137 1717314 ~ 1723715 (+) True dnajc14
XM_043252156.1 mRNA downstream 51624 1731801 ~ 1738760 (+) True mcrs1
XM_043252157.1 mRNA downstream 54002 1734179 ~ 1738760 (+) False mcrs1
XM_043252154.1 mRNA downstream 58866 1739043 ~ 1745824 (+) False suox
TU116164 other upstream 85112 1590744 ~ 1593125 (+) True G78500
TU116128 other upstream 167363 1485707 ~ 1510874 (+) False rargb
TU115960 other upstream 486516 1186866 ~ 1191721 (+) True LOC122353696
TU115925 other upstream 600838 1074744 ~ 1077399 (+) False cnbpb
unassigned_transcript_1592 other downstream 180120 1860297 ~ 1860368 (+) True trnaq-uug_15
unassigned_transcript_1593 other downstream 180656 1860833 ~ 1860904 (+) True trnap-agg_14
unassigned_transcript_1594 other downstream 180869 1861046 ~ 1861127 (+) True trnas-gcu_16
unassigned_transcript_1595 other downstream 181271 1861448 ~ 1861519 (+) True trnaq-uug_16
unassigned_transcript_1596 other downstream 181434 1861611 ~ 1861682 (+) True trnaq-cug_12

Expression Profile