RNA id: TU117591


Basic Information

Item Value
RNA id TU117591
length 519
lncRNA type sense_over
GC content 0.41
exon number 3
gene id mmel1
representative False

Chromosome Information

Item Value
chromosome id NC_056709.1
NCBI id CM032078.1
chromosome length 24513629
location 5739016 ~ 5765140 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

CTcactcagtcagtcagtcagtcagagGAACATCAGCACAGATAGCCGCTCGGGCGCTGATTCATTTCACCACACACCAGCTCTGGGTGCAAACTCAGAAGGGGTGTTTGGGAAATTGAAAGGTGTCCTACCTGGGCCAACAAGGACTCCATCATCAGAGAGCTCCAAGAATGGGAAAATCAGAGAGCCAAATGGATATCATGGAGAAAAGCACTAAACCGAGGAAGCATCGCTGGACTGTAGTGGAGATCGGACTGTCTGTCATTGTGCTTCTGATGAGCTGCGCTCTGGCTGGACTCATAGTGCTCTACACTTCAGCTCTGAGAGAGCGTTTTAACATAAATGAATCTTCAAAAGGTACAGTATGCCGTGAAATTGTTCATAAAAATCACAGTTTATGTAGTTTGGTATATTTTATCCACATCGTTCATTCTATTCTgctgcttttttcatttatttttaataatatattcttcattttatattcttatatattcttcatttttttctgccATAAAT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU117589 lncRNA downstream 21903 5739016 ~ 5740111 (-) False mmel1
TU117590 lncRNA downstream 21903 5739016 ~ 5740111 (-) False mmel1
TU117583 lncRNA downstream 32956 5727444 ~ 5729058 (-) True G79472
TU117559 lncRNA downstream 51307 5708994 ~ 5710707 (-) True G79454
TU117432 lncRNA downstream 521302 5239514 ~ 5240712 (-) True G79361
TU117606 lncRNA upstream 27830 5792970 ~ 5794230 (-) True G79490
TU117660 lncRNA upstream 92825 5857965 ~ 5858242 (-) True G79530
XR_006252035.1 lncRNA upstream 169764 5934904 ~ 5936532 (-) True LOC122353630
TU117688 lncRNA upstream 172131 5937271 ~ 5938271 (-) False LOC122353631
XR_006252036.1 lncRNA upstream 172936 5938076 ~ 5941950 (-) True LOC122353631
XM_043251436.1 mRNA downstream 36640 5714589 ~ 5725374 (-) True slc45a1
XM_043251437.1 mRNA downstream 36641 5711807 ~ 5725373 (-) False slc45a1
XM_043251435.1 mRNA downstream 36641 5714589 ~ 5725373 (-) False slc45a1
XM_043251434.1 mRNA downstream 36641 5714589 ~ 5725373 (-) False slc45a1
XM_043252039.1 mRNA downstream 117993 5636129 ~ 5644021 (-) True errfi1a
XM_043251453.1 mRNA upstream 96207 5861347 ~ 5868075 (-) False LOC122353621
XM_043251454.1 mRNA upstream 96207 5861347 ~ 5868075 (-) True LOC122353621
XM_043251442.1 mRNA upstream 122625 5887765 ~ 5896215 (-) False si:dkey-264d12.5
XM_043251441.1 mRNA upstream 122625 5887765 ~ 5896214 (-) True si:dkey-264d12.5
XM_043251443.1 mRNA upstream 122625 5887765 ~ 5896213 (-) False si:dkey-264d12.5
TU117068 other downstream 1796237 3962914 ~ 3965777 (-) False si:dkey-197i20.6
TU117044 other downstream 1847379 3913248 ~ 3914635 (-) True G79085
TU117055 other downstream 1938916 3813633 ~ 3823098 (-) False LOC122354343
XR_006252141.1 other downstream 2083088 3678762 ~ 3678926 (-) True LOC122354690
TU116923 other downstream 2220959 3540001 ~ 3541055 (-) True G79003
TU117706 other upstream 330993 6096133 ~ 6096480 (-) True G79565
TU117850 other upstream 1048485 6813625 ~ 6847758 (-) False vamp3
TU117849 other upstream 1074669 6839809 ~ 6847758 (-) False vamp3
XR_006252106.1 other upstream 1609214 7374354 ~ 7436471 (-) False LOC122354401
XR_006252105.1 other upstream 1609214 7374354 ~ 7436471 (-) False LOC122354401

Expression Profile