RNA id: TU119881


Basic Information

Item Value
RNA id TU119881
length 943
lncRNA type inter_gene
GC content 0.49
exon number 3
gene id G81038
representative False

Chromosome Information

Item Value
chromosome id NC_056709.1
NCBI id CM032078.1
chromosome length 24513629
location 11525058 ~ 11527052 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

gcgctttttttgtatttatttttcacaaaacctTCTTGTTCGCATTTAACGCCGTTCCAGCTTCCCAGCGATCAGGGTCAGAACCGAACTCAAGCGCTGAAATAAGACAGAGGCAGAGATCCGGCTCAACGCTCAGGTTTATTACGAGAGGTTCCGTCGAgccacagaaagaaagaagtgaacGAGTAGAAAACAGGGTCCGGTTTACTGGTCCTTCAGCTCCTTCAGACGCTTGATGGCAGACTTGACCGTGACGGCGGACGTCGTTGTACGTCCAGGCACCTCCGGCCACGGTTTTCATGCAGGAGCCGCAGTGCCAGATCCCTACAGCCTTTCTCTTCATCTTAGTCTGGACACACAAACCAGCAGTCAAACACAgtgcaacatttaaaacatctcCTCCGGATTTATAACGgctataatatttttaacacttaAAATAACTGCTGCTTAATTCGCGCGACTTTGAAAAGCAATTTATTCCAGCGAAAAACAGCCGAGTTTTCAGCTTCGTTTCCTGCTCGAGAAACACTGACCATCAACAACGGCCGAGCAAGAGGAGAAACGTCCATAAGAGGAGAATAAAATATTAGGACTTATTATTAGGACTCCTGAAGgtcgtgtgacgctgaagaccggACGAATGATGCTGAAGATGAACTGCACAATAAACGGCGGCTTTAAATAGCACAAGTCTTCTAGTGGAAGTAAAGCGCAGGCCTGGGGAGAGACTGGAGATGCCTCACCTTGCCGCAGAAGGAGCAGGTGTATTTCGAGTGCTGGCTGATCTCGATCTTCTTCACCATCTTCCTGAGGGACGCTCCGTAACGGGTGCCGTACTTCCCCACAATCCCCACCTTCTTGGTGCGCTTGGCCTGAGCATTTTAGCAGAAGAGGTGCCGATCCAAAAGAGAGCGAGCCACTGCGCATGCGCGGTTTTGCC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU119878 lncRNA downstream 4256 11520131 ~ 11520802 (-) True G81037
TU119877 lncRNA downstream 5611 11519051 ~ 11519447 (-) True G81036
TU119875 lncRNA downstream 13195 11511474 ~ 11511863 (-) True G81034
TU119872 lncRNA downstream 17289 11505660 ~ 11507769 (-) False G81033
TU119892 lncRNA upstream 9448 11536500 ~ 11631515 (-) False strn
TU119893 lncRNA upstream 9448 11536500 ~ 11631687 (-) False strn
TU119904 lncRNA upstream 44105 11571157 ~ 11571426 (-) True G81045
TU119905 lncRNA upstream 70806 11597858 ~ 11598328 (-) True G81046
TU119910 lncRNA upstream 74860 11601912 ~ 11604254 (-) True G81049
XM_043252193.1 mRNA downstream 20613 11499911 ~ 11504445 (-) True cfap410
XM_043252194.1 mRNA downstream 20613 11500109 ~ 11504445 (-) False cfap410
XM_043251848.1 mRNA downstream 68438 11444822 ~ 11456620 (-) True LOC122353939
XM_043251849.1 mRNA downstream 81489 11434329 ~ 11443569 (-) True ogal
XM_043252895.1 mRNA downstream 107807 11405002 ~ 11417251 (-) True tk1
XM_043251824.1 mRNA upstream 22547 11549599 ~ 11596374 (-) True strn
XM_043252389.1 mRNA upstream 129926 11656978 ~ 11661044 (-) True irf2bp2b
XM_043252116.1 mRNA upstream 174110 11701162 ~ 11705953 (-) True rbm34
XM_043251779.1 mRNA upstream 190210 11717262 ~ 11752522 (-) True LOC122353888
XM_043251741.1 mRNA upstream 239779 11766831 ~ 11780808 (-) False ero1b
TU119760 other downstream 105728 11403644 ~ 11419330 (-) True G80956
TU119843 other downstream 130182 11393360 ~ 11394876 (-) False LOC122354635
TU119776 other downstream 239769 11263332 ~ 11285289 (-) True mafgb
XR_006252140.1 other downstream 263938 11251255 ~ 11261120 (-) True si:ch73-100l22.3
TU119670 other downstream 380039 11140914 ~ 11145019 (-) True srsf7b
XR_006252062.1 other upstream 239779 11766831 ~ 11780809 (-) False ero1b
XR_006252156.1 other upstream 373916 11900968 ~ 11901098 (-) True LOC122354705
TU120112 other upstream 546544 12073596 ~ 12074075 (-) True G81192
TU120285 other upstream 918808 12445860 ~ 12447287 (-) True G81318
TU120624 other upstream 1291070 12818122 ~ 13057881 (-) False G81512

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
striped catfish (Pangasianodon hypophthalmus) TU210062 True 2260 lncRNA 0.40 3 NC_047605.1 7267561 ~ 7271271 (-)
tiger barb (Puntius tetrazona) TU210062 True 1352 lncRNA 0.38 2 NC_056718.1 26017371 ~ 26033198 (-)