RNA id: TU119893


Basic Information

Item Value
RNA id TU119893
length 690
lncRNA type sense_over
GC content 0.40
exon number 3
gene id strn
representative False

Chromosome Information

Item Value
chromosome id NC_056709.1
NCBI id CM032078.1
chromosome length 24513629
location 11536500 ~ 11631687 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

gtctgtgtgtgtgtgtgtgtgtgtgtgtgtgtgcgtgcgtgcgtgcgtgcgcgtccGTGTTTTCGTaccagtaaatatattttctgatttCGTTCATTTTGGTGCGTATTAATTTTAGATATATAAGAAAGAATCTCAATATGTATAGTTTTAAAGTATTGATCAACAATCTATTTATGAACCAGAATACAGTGTATATTAACCTGCGAAGCTAACCGTGAAGATTAACCGATGTTTGTGATACTAGTCGTGCGGGAGAGTTTAGTTCGCGCCACCTGCTGGTCAGAGATGGGAACTGTACAGCTGACTCGGCTACTGAAGATGCTGAAGCGCTATTGATCGACGCGATTTGATTATTCGGTCACCGAGCGATTGACGTGCTTACCGGAAACACCAGAGCATTTAAAGGGAACGATGACACGATTTGATTGGACGGTCGGCCGATGACGTCATGACGGGACGCGCCTGTATAGAGCTGTCGCTGAACTTTGAACCCTTTGGTTGTATAGAGTGAGTTCGGAAAGATcgtgttaataaatgctatactcctcttgtacatattttattattgatattactgTTTATTCTTGATTTCCCGTTGtattctcttttttcccccctcagaTGGACATTTatcaatataatacaataataaaagaatatgtTGTATTTCAaaaaaaaaaaaaaata

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU119881 lncRNA downstream 9448 11525058 ~ 11527052 (-) False G81038
TU119882 lncRNA downstream 9448 11525058 ~ 11527052 (-) True G81038
TU119883 lncRNA downstream 9448 11525058 ~ 11527052 (-) False G81038
TU119878 lncRNA downstream 15698 11520131 ~ 11520802 (-) True G81037
TU119877 lncRNA downstream 17053 11519051 ~ 11519447 (-) True G81036
TU119935 lncRNA upstream 5718 11637405 ~ 11648112 (-) False G81059
TU119936 lncRNA upstream 14135 11645822 ~ 11648112 (-) True G81059
TU119951 lncRNA upstream 48891 11680578 ~ 11685006 (-) True G81074
TU119953 lncRNA upstream 48891 11680578 ~ 11683244 (-) False G81074
TU119952 lncRNA upstream 51237 11682924 ~ 11685006 (-) False G81074
XM_043252193.1 mRNA downstream 32055 11499911 ~ 11504445 (-) True cfap410
XM_043252194.1 mRNA downstream 32055 11500109 ~ 11504445 (-) False cfap410
XM_043251848.1 mRNA downstream 79880 11444822 ~ 11456620 (-) True LOC122353939
XM_043251849.1 mRNA downstream 92931 11434329 ~ 11443569 (-) True ogal
XM_043252895.1 mRNA downstream 119249 11405002 ~ 11417251 (-) True tk1
XM_043252389.1 mRNA upstream 25291 11656978 ~ 11661044 (-) True irf2bp2b
XM_043252116.1 mRNA upstream 69475 11701162 ~ 11705953 (-) True rbm34
XM_043251779.1 mRNA upstream 85575 11717262 ~ 11752522 (-) True LOC122353888
XM_043251741.1 mRNA upstream 135144 11766831 ~ 11780808 (-) False ero1b
XM_043251742.1 mRNA upstream 135144 11766831 ~ 11780293 (-) True ero1b
TU119760 other downstream 117170 11403644 ~ 11419330 (-) True G80956
TU119843 other downstream 141624 11393360 ~ 11394876 (-) False LOC122354635
TU119776 other downstream 251211 11263332 ~ 11285289 (-) True mafgb
XR_006252140.1 other downstream 275380 11251255 ~ 11261120 (-) True si:ch73-100l22.3
TU119670 other downstream 391481 11140914 ~ 11145019 (-) True srsf7b
XR_006252062.1 other upstream 135144 11766831 ~ 11780809 (-) False ero1b
XR_006252156.1 other upstream 269281 11900968 ~ 11901098 (-) True LOC122354705
TU120112 other upstream 441909 12073596 ~ 12074075 (-) True G81192
TU120285 other upstream 814173 12445860 ~ 12447287 (-) True G81318
TU120624 other upstream 1186435 12818122 ~ 13057881 (-) False G81512