RNA id: XM_043252509.1


Basic Information

Item Value
RNA id XM_043252509.1
length 2678
RNA type mRNA
GC content 0.47
exon number 9
gene id iffo2b
representative False

Chromosome Information

Item Value
chromosome id NC_056709.1
NCBI id CM032078.1
chromosome length 24513629
location 5243607 ~ 5273639 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

TGCTTTTATGCGCGCGCGAGGGGCGCTGCTGCTGGCGGCGGGGCGGAGAGTGCGCTGCGGATCTCACTCTTTTAGGAGAATGAAACTCGATCCCGTCGCGCCGGCAGCGTCCGGTATAAAACAGTCCAGCAGAAGAAGAGACTGTGAGAAAAATATAACTGTGATTGGAGAGTGTGGAGTTCACGATCACCGACATGACGCGCAGATCTCTAGATGACCGGGAGTTTCAGAAATGAGCTGACACACAGACTCCGCGCTCCTCCGTTATTCCTCGCGTTTCCACGGAGAACATGATGCGTCCTGGAAGGATAGACAGATAATGACCGCACTGCTTGTTTCTTGTCAATCGATAATACTTGATACTGATTTTTTACGCATGAGAAGAAGACCGCATGGACGCACCAGCTTTGAATCGAAGTCGTTAAAGCTCGCCGATatctatttttgtataaaaacatgAGCTCGCTGTTGTTCGGAGAAGGTTTTTTGGGCGGCGTGGTAAGCGGCGCGCCGTCGGACGCGGTTCCCAGAGCGCTACGCAACGACCTGGGTTCCAACATCCATGTTCTCAAGACCCTCAACCTGAGGTTCCGCTGCTTCCTCGCCAAAGTCCATGAGCTGGAAAGAAGGAACAAACTTCTAGAGAGTCAGCTAAAGCAAGCCTCCGGTCAGCCGAGGCATCAGGGCTTCTCCTTCACGCGTGAAGTCGGGGTCCAGACTGACTCTCTGGGCCCCAGACTTCCAGGCACCATCTGGAGCTTTACGCATATTTTGAGACATGGAGAGCGCGTCAAGACTGTCCAGGGACCCGGAGTCACCTGGACCCATCCGGATGGGGTCGGGGTCCAAATCGACACCATCACCCCAGAACTGAGAGCCTTGTATAATGTTCTGGCCAAAGTCAAACGGGAGCGGGATGAGTACAAGAGAAAatggGAGGAGGAGCTGTCGAGAAGAGAACAGATGGAATCAATGGTGCAGACGCTGCAAGAGAATGTAAACGAATCTGAAGCCATTCAGGGCGAGTTGAATGAGAAGGTTGAAAGACTGAAAGCTGAACTGGTGGTCTTCAAGAGCCTCATGAGTGATGAAATGTCTGACCTTGACACCAAGATTCAGGAGAAAGCCATGAAGGTGGACATGGACATCTGCAGGAGAATTGACATCACAGCCAAACTGTGTGACGTGGCTCAGCAGAGGAACTCAGAAGACATGTCTAAGATGTTCAATGTCAGTCCATCCAGAGCATCAGCAGACAGGATGGCTGTGGTGtgcaaaaaaaaggagaaaaagccAGTGTCAGATGAGGAGAACTCAGAGATGGATGCAGATCCCAGCACTTCAGAGGAGGATGTCCCCTTCAACATCACAGACGAGATGAAACGCATGCTAAACCAGCTACGGGAGACGTTTGAGATCGATGATGACTGTGACAGTTTGACATGGGAAGAGAACGATGATACGCTGTTGTTATGGGAGGATTTCACCAACTACAACGTTCCCTACAGCCTTACTAATAACGCCGGTGCCCTCGACTGCAACGGAGACGCACAAGAACCTGAATGCAGTCTGGGAAATCTCTTTGATGAGACTGAGTCTCTTTTCAAGACCAGAGAGCAGGAATATCAAAACACAATTGGACAAATTGAGATGGAGTTGGCCACAGCTAAGAGTGACATGAACAGACATCTGCATGAGTATATGGAGATGTGCAGCATGAAGCGAGGGCTGGATGTGCAGATGGAGACATGCAGGAGAATGATCAAGGGTGGCAGAAATTCTCTTTCCATCAGCTCATCTGCGAGTAGTGACTCAGGGAACACTGACGAGATACAAGATGAGTCGGACAAGGACGGAGAGACGGAGGGGCCAATCAGCTGATACCTGCCCAAGCTGACCCCACTCTATTCCCCCCACAAGCTCCAATCAGCTCTTGGGCCTCCTAGCAGTCGGCCAATGCCATTACACTGAGGGACAGAGCCCACTCAACCAAACCCTAAATCCTGTAGGTGCTTTAACGTCTCTGTGTTAGAGTGGGGTGGAGTTGATGAgggttgtttttgtgttttgacatCAATATGGATGTGTCACATGGTGCCACAGCTGTCACAGGACAGCCTGTCTACGAATCAGATCAATCTCAGCCAAAATACATCAATACACCCGCTCAAACCTGAAGTCCATATCAAGTCCATATCTTGATTAGAAAATGTCCACACAACATGAGTGAAACAATAGACTGAAACCAATCAGACCAAATGGACTGATCTCCCTTCAGCTGAAAACTTTCCTTAATATTcatggctttttatttttttaaaaactatttcagaaATCAAGTTTACTGCAGAAACATTTAGGCCTTTTTAAGCCCGAATCCAGTCGACAAATGTGgaacacagaaaaggctcaagTTCTATGCAATCAGCCTTATTTTGTGATCTTTGTTTTCTTAGCTAACAAAACTGTGCTCTAAGAGTGTTTTGCTGATGTTCACAGTTAGCtatgaaaatgttattcatGAATGTTATCTGAACATTAAAATGTccagttttcataaaaatttaACCCTCTGGTGCTCTTCAGTAATTTTTTAacccctatttttttttttacttcattggATAGAATTAAACTTGGTAAATGTTTTGCCACTTTCTATGTGACAAACATGATTT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU117432 lncRNA downstream 2895 5239514 ~ 5240712 (-) True G79361
TU117395 lncRNA downstream 48281 5194012 ~ 5195326 (-) True LOC122354468
XR_006252113.1 lncRNA downstream 48281 5194796 ~ 5195326 (-) False LOC122354468
TU117393 lncRNA downstream 61909 5181296 ~ 5181698 (-) True G79329
TU117391 lncRNA downstream 71088 5171775 ~ 5172519 (-) True G79327
TU117559 lncRNA upstream 435363 5708994 ~ 5710707 (-) True G79454
TU117583 lncRNA upstream 453813 5727444 ~ 5729058 (-) True G79472
TU117589 lncRNA upstream 465385 5739016 ~ 5740111 (-) False mmel1
TU117590 lncRNA upstream 465385 5739016 ~ 5740111 (-) False mmel1
TU117591 lncRNA upstream 488383 5762014 ~ 5765140 (-) False mmel1
XM_043252518.1 mRNA downstream 14277 5218233 ~ 5229330 (-) True aldh4a1
XM_043251578.1 mRNA downstream 31449 5210782 ~ 5212158 (-) True LOC122353703
XM_043252095.1 mRNA downstream 734427 4497560 ~ 4509180 (-) True LOC122354090
XM_043252094.1 mRNA downstream 734427 4500189 ~ 4509180 (-) False LOC122354090
XM_043252096.1 mRNA downstream 756410 4484135 ~ 4487197 (-) True ghrh
XM_043252600.1 mRNA upstream 5836 5279467 ~ 5284046 (-) False akr7a3
XM_043252599.1 mRNA upstream 5836 5279467 ~ 5284046 (-) True akr7a3
XM_043252702.1 mRNA upstream 80028 5353659 ~ 5382528 (-) True kcnab2a
XM_043251299.1 mRNA upstream 219120 5492751 ~ 5547015 (-) True pax7a
XM_043252039.1 mRNA upstream 362498 5636129 ~ 5644021 (-) True errfi1a
TU117068 other downstream 1277830 3962914 ~ 3965777 (-) False si:dkey-197i20.6
TU117044 other downstream 1328972 3913248 ~ 3914635 (-) True G79085
TU117055 other downstream 1420509 3813633 ~ 3823098 (-) False LOC122354343
XR_006252141.1 other downstream 1564681 3678762 ~ 3678926 (-) True LOC122354690
TU116923 other downstream 1702552 3540001 ~ 3541055 (-) True G79003
TU117706 other upstream 822502 6096133 ~ 6096480 (-) True G79565
TU117850 other upstream 1539994 6813625 ~ 6847758 (-) False vamp3
TU117849 other upstream 1566178 6839809 ~ 6847758 (-) False vamp3
XR_006252106.1 other upstream 2100723 7374354 ~ 7436471 (-) False LOC122354401
XR_006252105.1 other upstream 2100723 7374354 ~ 7436471 (-) False LOC122354401

Expression Profile