RNA id: TU94558


Basic Information

Item Value
RNA id TU94558
length 1247
lncRNA type inter_gene
GC content 0.32
exon number 1
gene id G63868
representative True

Chromosome Information

Item Value
chromosome id NC_056706.1
NCBI id CM032075.1
chromosome length 24299999
location 13711155 ~ 13712401 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

tttatttaggtaTTGTAGGAAGcagtgttattgttaactaaaactaaagttaTTACAGtttgatttaatacatttaaaagaaatgaaaatatatatttttaaaaatttttcaaaatcacataacaaaattactaaaataaaaaaagatgtaaacataaatataaaagctattcagttaaaaatgctataatagtatataatactttaaatcattctaaaataacCCTGATAAGAATAtttactgtagaaaaaaaatatgaccaaTATAAAGATCAGTTTTCTCAGAGTATCAGTACGGTTACATCATCTTGCATTAAGTGTATTATTCACAGTAAAGTTTATAAATTACTGAACCATATGGCAGGTGCTGGTCTTAGATCTGTTGTCTTTTAAATTTACTCAGCTCCCTGAAAACCTGAGAACAGAAACATATCATTACCTTTATTGCTTAGAAATCGGTTTTCACAATAGCAGCTATAGGATACGTCTTCCAATATCCATTTTTGCAATTATTCCTCAGTTTTCTCTTTAAGAGCTTTGGCATTCAAACTTATTTGTTACTTCCTTGTTGTGTTCAGCGTCATCTTTACTTACACTTGTaatagttcaaataaaatgctCAGAAGACaaattagctacatttaaaatacttacCCATATGCAAACGGCACTGAGGACAAGTTTACTCACAGCCAGTCCTACACAACCCCAAAGGATAAAAAAAGCTGAATCCTCATTTAGATGAGGCCATGGGATGCTAACGTTTGCCCATGATTCATTAATAATCTTGGTGGAGAAATCAAAGACGATGGGTGAAGCTGTTGAAACACAATCTAGGGAGACAAATGAAATTAAGCACATAAATGGCTAAAAGAACAACGCAAAGCAATattgtttttctgcattttaaactGACAGCTATATGTATTTGAATATTGGAAACTAAACCAAAACGTACAATGGTCAACATATTATgccaaatattaatttgtttgcattcacgattgtttattaatatatgaaataccTGTGATATTAAGTCTAACCCAATTCACGCAGTACATTCCTCCAGCTCTGGCTCTTATTAAACACTTGTAAGTCCCAGAATCGGCAGGAGACACTTCCCTTAAgaacaaagaaaagtttttatcCGGTGACCCAGAATCAGGGTGCTTGTTAGTCTTGATGTCattttctgactttttcttgATTTTCATTGTGGTGGATTTGTCACTGCGGTTGTTGTA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU94557 lncRNA downstream 11087 13699657 ~ 13700068 (-) True G63867
TU94556 lncRNA downstream 17933 13688178 ~ 13693222 (-) True G63866
XR_006251607.1 lncRNA downstream 28699 13619992 ~ 13682456 (-) True LOC122350567
TU94394 lncRNA downstream 360884 13347624 ~ 13350271 (-) True G63751
TU94388 lncRNA downstream 378768 13332164 ~ 13332387 (-) True G63745
TU94562 lncRNA upstream 4426 13716827 ~ 13717372 (-) False mc3r
TU94565 lncRNA upstream 11330 13723731 ~ 13724000 (-) True G63873
TU94566 lncRNA upstream 12668 13725069 ~ 13725474 (-) True G63874
TU94644 lncRNA upstream 285281 13997682 ~ 13997966 (-) True G63941
TU94645 lncRNA upstream 294412 14006813 ~ 14007018 (-) True G63942
XM_043247173.1 mRNA downstream 69673 13639945 ~ 13641482 (-) True cebpb
XM_043247714.1 mRNA downstream 95817 13608854 ~ 13615338 (-) True adipor1b
XM_043247715.1 mRNA downstream 95823 13608854 ~ 13615332 (-) False adipor1b
XM_043247847.1 mRNA downstream 102878 13599250 ~ 13608277 (-) False LOC122351021
XM_043246301.1 mRNA upstream 4227 13716628 ~ 13720514 (-) True mc3r
XM_043246691.1 mRNA upstream 460653 14173054 ~ 14175823 (-) True LOC122350319
XM_043246693.1 mRNA upstream 469131 14181532 ~ 14186141 (-) True LOC122350320
XM_043246692.1 mRNA upstream 469131 14181532 ~ 14186139 (-) False LOC122350320
XM_043246690.1 mRNA upstream 475028 14187429 ~ 14190244 (-) True mpeg1.1
XR_006251575.1 other downstream 1348060 12351246 ~ 12363095 (-) False kcnq2a
TU93842 other downstream 1446622 12263694 ~ 12264533 (-) True G63385
unassigned_transcript_1295 other downstream 1913953 11797130 ~ 11797202 (-) True trnaf-gaa_1
TU93692 other downstream 1931904 11778271 ~ 11779251 (-) True G63274
TU93426 other downstream 2146750 11562278 ~ 11564405 (-) False G63095
TU94636 other upstream 97027 13809428 ~ 13863250 (-) True G63933
XR_006251614.1 other upstream 1011807 14724208 ~ 14731391 (-) False slc20a1a
TU95023 other upstream 1067130 14779531 ~ 14781710 (-) True G64228
TU95181 other upstream 1571460 15283861 ~ 15284130 (-) True G64353
XR_006251609.1 other upstream 1936825 15649226 ~ 15700896 (-) False mvb12bb

Expression Profile