RNA id: XM_043246693.1


Basic Information

Item Value
RNA id XM_043246693.1
length 2703
RNA type mRNA
GC content 0.43
exon number 3
gene id LOC122350320
representative True

Chromosome Information

Item Value
chromosome id NC_056706.1
NCBI id CM032075.1
chromosome length 24299999
location 14181532 ~ 14186141 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

TTTGTCATCAACATCCTGTTTGATTTATCTTGACCGTGCACTTGCACTTCAATTCCCTCTGCGAAGTCTCGTGAGAACCCTCCCCCACTGCACAGCTGGTattcactaaaaaaagaaaagaaaaaaaatcaaaacaaaaccagtcagcgGATGAAATCTGTCCGGCACAGAAGAAAAGGGCTGACAGGAAGATACTCCCTCCAACAAATACCACATACTCAGTCTTCACAGTGCTCCTTTTTAGCATAAGCATTCCAGAAACGCACTCCAGGGCAAAAACGTTTCATGAAGAAAGTATAATTTGAAAAGAAGGATTTTTCTAAAGTAGGTCAATATGGTGGTATGACACAGCTGGAAAAGACTGCTGCACGAAAGCTTTTCTTGGTAGGTAAAAACTTGACATCATCATGGAGACAAATCACTGCGCTTTCCGCATCTTCTTCTGCATTTCTCTGATCTTgacccactggcacacagcttcTGCTTGCCACACAGGCTCTCAGGTAGAGTGTGAGAAAGCCCCATTTGTGCCGGGTTACAACCTGGTGGGCGAAGGCTTCGATGTTGTCAGGATGCGCCGTAAAGgtgcatttttgattaatgtgAAGTCGCACATGGATAATGGCACTTGTACGGTCTGCAAAAACCGCTTTCAAGGAGGGCAGATACAGAAACTTCCCTCAGCTGTGCTGGACTGGCGTCCCTTCAGCCGCTGCAGCAAACAGCTTTCTAGTGCTCTTCATCATTCTGTTGACTCCCTAATGAAGAGTTCGACATCGCTCATCAATAACAACTGGGAAATTGACCTAAATCTGGATGACATGGGAAAGGCAATTTTTGGAGGGAGCCGTTCAGATATTGCCAAATTTGCTCAGTCTCAGAATGCAATGGACAAGGCGACGTTTGCCCTCCATGAGCTCAGCTGCACATACTACAGTTACAGAGTTACGGACAACCCACAGCTCAGCAATGAATTCTCAAAACACCTCCAGCGACTTCCAACACAATACGATGAGAGAACAAGACCCCTGTACCGAAGAACTATAGATACTTACGGCACTCACTACATACGACAAGTCCACCTGGGAGGGCGAGTGAGGCGGGTCACGGCTTTTCGAACTTGTCTTGCGACCCTCAAGGGCTTCTCAGAGACCGATATCAAGAACTGCCTGAATATTGAGTTAAAGATGACTTTGGGATTCCTTCCAGCTAACGCTTCGCTTTCCAACAAATGCTCTCAAATCCTTAAAGATAACATGAGCATGGGATTCTACCAGGGCTTCATGACGCACAAGATAGAGGTGCTGGGAGGTGAGAAATACTTTCCAGAACTAGTTTTAAACCAAAGCCCAGCTGAAGCGTACTCCAACTGGATGATGAGCTTGCATGACAATCCTGAAGTCATATCGTACGCAATATTCCCTCTCCATCATCTGGTGGCGGATCCTGAGGTTAGCGTCAACCTGAAAAGCGCAGTAACTGAGTATATCGAAGAGAACGTCCTTTCTGTAGGTCGCGAGGAGATTCAAGGTTGCTCGCGAACACCGAATCTGGATCACAACTGCTGTCCCATGCGAGCCGGCCGCGGGAGGTTAGCGGTGTCTGTGCAGAGAGCCGCGGGCCTGAAAGCAGACCTCTTCACGCGTACCGATGGTTACGTGAAGGTTTGGTACAACCTGATGTACGAAGAGACTGAGGTGGTGATGGACAATAACGATCCCGAATGGAACATCAGCTATGATTATGGATCTATTGAGTTTGGTCACGAACTCATATTTGAGGTTTGGGACAGTGACGTCATTTATAATGACATGGTGGGGAGATGCGTGGTCAGCCCTGAACATGGGACTCATTCGCACAGCTGCAAATTAAAGAGAGGCATCCTGTATTTTACTTACAGTGCTTCTTGTGACGCTCATCTGACTGGACCCAGGTGTAGCAGATATTCCCCAAAAACATAGAACCTTGTAAATGTAACTAACAATACATCCTTAACAACATAAAGTATACCGTTAGCAACACTCACATCttcaatatcatttttttatataaatctaatgttaaaatgtaatagcAAATGATGAAAagcatatttgcatattgttggtttgatgtgtgtttttgtgtttgttatgtaacaaagtgaaattaataataaaatcttttgtCGCCGTTTTGTTCTTTTGCAGATGTTAACAATAAGGCATGAAAACTATCAGTAAAATCACGGCCTGATGCGGAATAAACCAAAgcattcaaataatattttttctttagcattttattttacaatcacttttatttacgCAAGGGTAAACAGACAGTAGATGTGCTTTCCTGgtaattcatattaaatatcttACCTACAGGCAAATAATTGGTAAGAAAAAGTACCTGAAGTGAATGTAGCAGAACCTGCTTTTGCTGAGTTCGACGTGTTCCCAGATTAATATCTTTGTTGACTCTGAAACAACATTGTGATATAAAGAACAAGTTTTCTAAAGAATATTATCTGCTGATGTGCCAGCTGTATTTGAGGACTGaggtgtattgtgtgtgtgcatgccaTGTCAGCGTCTCTTTTGCTCTAACGCTGACAGCTGCTTTTTGACGATGTCTAACGCATCTCTGATGGTTAATGTATTTCGTTTCATGTATTTTGACTTTGGCAAAAATAAAGTTGCTTTTAATTGAATCAACACG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU94662 lncRNA downstream 44109 14131391 ~ 14137423 (-) True G63955
TU94663 lncRNA downstream 53110 14128189 ~ 14128422 (-) True G63956
TU94670 lncRNA downstream 63530 14117730 ~ 14118002 (-) True G63963
TU94669 lncRNA downstream 81381 14099665 ~ 14100151 (-) True G63962
TU94647 lncRNA downstream 118792 14062497 ~ 14062740 (-) True G63944
TU94682 lncRNA upstream 16905 14203046 ~ 14203270 (-) True G63975
TU94683 lncRNA upstream 17501 14203642 ~ 14203921 (-) True G63976
TU94689 lncRNA upstream 79031 14265172 ~ 14265635 (-) True G63979
TU94690 lncRNA upstream 79585 14265726 ~ 14266043 (-) True G63980
TU94694 lncRNA upstream 82463 14268604 ~ 14269763 (-) True G63981
XM_043246691.1 mRNA downstream 5709 14173054 ~ 14175823 (-) True LOC122350319
XM_043246301.1 mRNA downstream 461018 13716628 ~ 13720514 (-) True mc3r
XM_043247173.1 mRNA downstream 540050 13639945 ~ 13641482 (-) True cebpb
XM_043247714.1 mRNA downstream 566194 13608854 ~ 13615338 (-) True adipor1b
XM_043247715.1 mRNA downstream 566200 13608854 ~ 13615332 (-) False adipor1b
XM_043246690.1 mRNA upstream 1288 14187429 ~ 14190244 (-) True mpeg1.1
XM_043246031.1 mRNA upstream 7692 14193833 ~ 14194501 (-) True LOC122349900
XM_043247241.1 mRNA upstream 39215 14225356 ~ 14259044 (-) False slc20a2
XM_043247238.1 mRNA upstream 39215 14225356 ~ 14259044 (-) False slc20a2
XM_043247237.1 mRNA upstream 39215 14225356 ~ 14259043 (-) False slc20a2
TU94636 other downstream 318282 13809428 ~ 13863250 (-) True G63933
XR_006251575.1 other downstream 1818437 12351246 ~ 12363095 (-) False kcnq2a
TU93842 other downstream 1916999 12263694 ~ 12264533 (-) True G63385
unassigned_transcript_1295 other downstream 2384330 11797130 ~ 11797202 (-) True trnaf-gaa_1
TU93692 other downstream 2402281 11778271 ~ 11779251 (-) True G63274
XR_006251614.1 other upstream 538067 14724208 ~ 14731391 (-) False slc20a1a
TU95023 other upstream 593390 14779531 ~ 14781710 (-) True G64228
TU95181 other upstream 1097720 15283861 ~ 15284130 (-) True G64353
XR_006251609.1 other upstream 1463085 15649226 ~ 15700896 (-) False mvb12bb
XR_006251608.1 other upstream 1470778 15656919 ~ 15700896 (-) False mvb12bb

Expression Profile