RNA id: XM_043246691.1


Basic Information

Item Value
RNA id XM_043246691.1
length 2367
RNA type mRNA
GC content 0.41
exon number 2
gene id LOC122350319
representative True

Chromosome Information

Item Value
chromosome id NC_056706.1
NCBI id CM032075.1
chromosome length 24299999
location 14173054 ~ 14175823 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

ATAGAAATGCACTTTCACTCAGCACACAAGGTGGTCATGGAGTCGAGAGTCTTCTGCCTGCTGTTGCTCTACTGCTCTATCAACATCTGCAACGTTTATCCACTCATTCATCCCAGTAATGGACTCAATGAATGTCATAAAAACTCACCTTTGCCAGCTCTGGAGGTTCTTCCAGGAGGAGGCTGGGATAACCTGCGCAACATAGACATGGGCCGGGTGATGAATCTGAGCTATTCCCAGTGCCAGACAACAGAAGACGGTGTCTATCTCATTCCAGATGAAGTTTTTGTGATTCCACAGAAAGTGAGCGGAGTGGAAACAAACTCTGAGATCATCATGTCATGGATGGACCAGACAAGCTCCACATCTAGCTCCATCAATGCAGATGCTTCCTTTCCTCTGGTGCTCAACGGGAAATTTTCCAAAGAAAGCCAACGTGTTAAAACCCACCAAGTGAAGGAGAGTTCTGCAACAGCACGCGTTCAAGTCCGTAACCATCTGTACACAGTAAAGCCGTATCCCAACTTCCCTTTTGACATCCGCTTTGCTCAACAGGCAAGGGAGATCGCAGATGCTATTAAGAACAACCAAACACGTCTAGCAACGTATCTGTCAGAGAAACTCATTCTTGATTATGGTACTCATGTCATCACAAGTATTGATGCAGGTGCCATTTTGGTGCAAGAggactatttaaaaatgtcttttgtcaCAAAGAATCAGCTACAATTGTCTTCTCTTTCTGCATCAGCAGGTCTTTCATTTTTTGATAAACTTAAATTTGATTTTGGCAGCAGTGGATCACAAAACTACTCTCAAATCAGTGGTTATCAGAGCAACATCACATATTCCTTAATTCAGAGTCAAGGAGGGGCTTTATTCTACCCAGGCATCACTCTGCAGAAGTGGCAAGAGAGTACACTCAATAATCTGGTGGCCATTGACCGCTCTGGGCTGCCCATTCACTATTTTCTGAATCCATCAGCATTCCCAGACCTCCCAGTACCAGTAGTGAATAAATTAGCTTTGTTGGTTTCTCAGGCAGCAGAGCAGTACTATAAAGTAAATACCATTCCAGGGTGTATCAGTCCAGATTCCAAAAACTTCAATTTTCAAGCAAACGTAGACGATGCATCTTGTGAGGGCCCACTCACTAATCTTAGCTTTGGTGGCGTTTACCAACGATGCACTGCACTGACATCAGATGGAAGCACAATCTGTGATGACACAGCACAGACAAACCCAGCTACTGGTGTTTATTCTTGTCCTTCACAGTACAACTCCACCCTGTTACGCACTGAGACAATAGAAGTAGGTTATACTCGTTACGAGTGCCAAAGAAACTGTCGTTCATGTGGTTTCTTGTGGTTGTCCACTTGTTGTGACCAAACATGTAATGATGTATACTATGTTCGCCGTGCAAAGGTGGACACTTACTGGTGTTCCACAGTTCAGAGAACCCCTGTAAACTCTGGATATCTCTTTGGAGGCCTATATGGACCGTCTTTGCAAAATCCAATTACCAAATCTTATGGCTGTCCTCCAAATTTCTTTGTCCAAAAGTTTTTGTCTAGTGGTTTGATGGTTTGTCTGAGCAATGATTATGTCACAGCAACTAAATCCTCCGTGCCTTTTGGTGGTTTCTTCAGCTGCCAATCTGTCAACCCTCTCTCAAATGGTCAGTCTCGCTGTCCACCTCAGTTCAGCCAACAACTAGCTGCCATAAGCGACGGTTGTGAGATATTGTACTGCGTCCAGTCGGGTGTATTCAGCGGTGGTCAGTTAAAACCTGTTCGTCTCCCACCATTCACAAGCCCACCGCTGATCGGCATGACTGCCACCAACTCTGTAGCTGTAATGACAGATGGTAATGTTTCCTTGGTGAGAGCTGGAGAAACAAGGACATGGCAATTGGCAAATCCTGttgaaattaatcaaatgtttgaGAAGTCTGGAGGAGACAAGGCTGGTGTGACCTATGGTCTGATAGCTCTAATTACTCTTGAGGTATCAGGATTGCTTGTTTAATGCGTATAAAGAGGTTTTCATACCTTGAGGGGgaatttgtaaacaaaattgACATTGTCAGgaagaacaaatgaatgaaaaagctAATTATCATAATTGCTAGAATTATAGTCATATTACAAAGTGATTGACACAAGTACATGGGTATAGGTTCAAGGATgtttatagtttaaaaagaaaaaaatcattattgttATCGTTAATTATAATAGCGGTGGTAGTACTACTATATTATTAGCAAAGTTATCcaactatatacagtatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatataaaatcaaaacaa

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU94662 lncRNA downstream 35631 14131391 ~ 14137423 (-) True G63955
TU94663 lncRNA downstream 44632 14128189 ~ 14128422 (-) True G63956
TU94670 lncRNA downstream 55052 14117730 ~ 14118002 (-) True G63963
TU94669 lncRNA downstream 72903 14099665 ~ 14100151 (-) True G63962
TU94647 lncRNA downstream 110314 14062497 ~ 14062740 (-) True G63944
TU94682 lncRNA upstream 27223 14203046 ~ 14203270 (-) True G63975
TU94683 lncRNA upstream 27819 14203642 ~ 14203921 (-) True G63976
TU94689 lncRNA upstream 89349 14265172 ~ 14265635 (-) True G63979
TU94690 lncRNA upstream 89903 14265726 ~ 14266043 (-) True G63980
TU94694 lncRNA upstream 92781 14268604 ~ 14269763 (-) True G63981
XM_043246301.1 mRNA downstream 452540 13716628 ~ 13720514 (-) True mc3r
XM_043247173.1 mRNA downstream 531572 13639945 ~ 13641482 (-) True cebpb
XM_043247714.1 mRNA downstream 557716 13608854 ~ 13615338 (-) True adipor1b
XM_043247715.1 mRNA downstream 557722 13608854 ~ 13615332 (-) False adipor1b
XM_043247847.1 mRNA downstream 564777 13599250 ~ 13608277 (-) False LOC122351021
XM_043246693.1 mRNA upstream 5709 14181532 ~ 14186141 (-) True LOC122350320
XM_043246692.1 mRNA upstream 5709 14181532 ~ 14186139 (-) False LOC122350320
XM_043246690.1 mRNA upstream 11606 14187429 ~ 14190244 (-) True mpeg1.1
XM_043246031.1 mRNA upstream 18010 14193833 ~ 14194501 (-) True LOC122349900
XM_043247241.1 mRNA upstream 49533 14225356 ~ 14259044 (-) False slc20a2
TU94636 other downstream 309804 13809428 ~ 13863250 (-) True G63933
XR_006251575.1 other downstream 1809959 12351246 ~ 12363095 (-) False kcnq2a
TU93842 other downstream 1908521 12263694 ~ 12264533 (-) True G63385
unassigned_transcript_1295 other downstream 2375852 11797130 ~ 11797202 (-) True trnaf-gaa_1
TU93692 other downstream 2393803 11778271 ~ 11779251 (-) True G63274
XR_006251614.1 other upstream 548385 14724208 ~ 14731391 (-) False slc20a1a
TU95023 other upstream 603708 14779531 ~ 14781710 (-) True G64228
TU95181 other upstream 1108038 15283861 ~ 15284130 (-) True G64353
XR_006251609.1 other upstream 1473403 15649226 ~ 15700896 (-) False mvb12bb
XR_006251608.1 other upstream 1481096 15656919 ~ 15700896 (-) False mvb12bb

Expression Profile