RNA id: XR_006251568.1


Basic Information

Item Value
RNA id XR_006251568.1
length 1964
lncRNA type inter_gene
GC content 0.34
exon number 2
gene id LOC122350118
representative False

Chromosome Information

Item Value
chromosome id NC_056706.1
NCBI id CM032075.1
chromosome length 24299999
location 17362169 ~ 17365510 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

TTTCCTTGGAGGCAAACGAAAGACGAAAGCGTTCATATGCAGGCGTGTTGTAAGTTGTTTAAGTAATTATATCAACTGCTTGTGATGAGTGTGATGTGTTTCGTAGTTCAAAtccattatttaattgtttattgcGGTAATATTTTAACGAGATACCAAAAAAGTAGGCTATAAGGAATATAggctaattaataaaaatctgattatttgcattttaattttttttgtgcctAAACTGTATTAGTCGTTGTTGAAAGTAGTGCAGTgggttaaatattatattaacaatttaataaagtCTCGGTGTGTCTTACAGTAGACTATGTGGCAGTGACAGCATCACTGGTATCACACTAGTAGTGTCTCCTTTctgacagaaaacacagataCAAAGTAGGATGGGATGAGAGAACATACTGTGAGGATTCAAGTGACCATGGAACAAATCAAAGGGTCAAAACGCCTTCACGCTCATCTATTGTTACGaTCTTGGAAACACATCAGTGCCAGCAACCAGTACTTCAGATGAAGATGTATTTTGTTCTCCAAGACACGAGTGCGGTGCGCAtgacactgtaaaatataatggCATCAAATAAACAGCAGTAGGGTGTTCGGTGTTCCACGTGGTGAGTGAAAGTCCATCTGAATAACGGAATGAATATGTTCTTTTTAAACATCACTGATGCTACCAATTTTCATCATTTGCATTCAGTGGTATTTTTAACAACCACAATACACAATCGAGATAATATGAAAACCGACGACAAGACCgctaaaaagtttttgttagtTAGCTGTTTTGTATGTTGACTACTATAAGTGTTAGTATTAAACACCGCAAGTGTTCATTTCAACACTTTAATAAAACCAATAGacaagaatgtattttttttatagatcgTACTtccaacaatttaaaaataagttaaaataaaataataataataataataataaatgtactgaCTGTAGTAAGCAACATTTTCCACACagagaatattaataaaaaaacaaagacagaagaaATTCGGCGGATGGGATGAGAGAACATCtgatagtgtgtgtgagtattcAAACCACTTAAGTGTTGGCTTAACAACACACAGTATAAGATCCTGCATGATCCTGAAACTAGCGCAGAGTTTCTTACCTTGTCATTTATTACTAACGGTTTGGAATGAAGAATAAATCTAAACACCTTTCTTTCACACCACCTGGAAGGAATTCTATTTGTTCAAAGAAATGCACAGGCAattcatttttctctcttttcaggTTCAAATTTTGTGGTGTTGTGTTACTTACTGTAGCCAGCAGAGGGGGCGGTTGcactttaaattatgttttgcaaTCAGATGGAAATAAGCCCAATAGAAgccttttaataattaaatgatttgaatTATTGTGTGTTCACAAAAATCATGCCTTTTTTAACAAAGCtgtataaaatgttgaaaaagcatttttttctttggaagatttttctaaatatctttttacaataatatgAAAGACGACAACAAAAAGACAACGAAGAAAGTAGTCAAGCCACAGAGGTGGATCATATGGAGAGAATTCAGCAGCAACAGCTGCAAATATTCATAAAAGTAAACTCAAAGCACAGTGAATGCTGTTTAATAATTATGTGTCTGTCGTTCCTTTCCAGTAATCGGTGAGAAAGAGGCCATGGCAGCTACAACCGTGTTTCAACTTTCTTTAACACAGAACTGTTCTGTCGAACCGGAGCTCCATGAGCAACAGAACAAACCTACCATCAAGAAAAAGCAAAGATATGAAGCTTCAAACGtttaaaagcatcagttttcaaatatgttaatgttaatattgttttgaagtcatgacATGATATTCTAATAAGTGATTGTGTGACaattaatctttattaatcaaaactctgtaaatttgtgtaaaatggaataaaaagtgtctgagtttta

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU95712 lncRNA downstream 319 17359436 ~ 17361850 (-) False zgc:194007
TU95713 lncRNA downstream 319 17359436 ~ 17361850 (-) False zgc:194007
TU95714 lncRNA downstream 319 17359436 ~ 17361850 (-) False zgc:194007
XR_006251657.1 lncRNA downstream 18464 17322476 ~ 17343705 (-) True LOC122350953
TU95704 lncRNA downstream 41197 17320376 ~ 17320972 (-) False LOC122350953
TU95730 lncRNA upstream 45505 17411009 ~ 17412872 (-) True G64724
TU95776 lncRNA upstream 235762 17601266 ~ 17645509 (-) False kcnip3a
TU95777 lncRNA upstream 235762 17601266 ~ 17619155 (-) False kcnip3a
XR_006251626.1 lncRNA upstream 292305 17657809 ~ 17660978 (-) False LOC122350842
TU95783 lncRNA upstream 293070 17658574 ~ 17660966 (-) True LOC122350842
XM_043246317.1 mRNA downstream 319 17359385 ~ 17361850 (-) False zgc:194007
XM_043247728.1 mRNA downstream 265374 17046467 ~ 17096795 (-) False LOC122350945
XM_043247729.1 mRNA downstream 265378 17046467 ~ 17096791 (-) True LOC122350945
XM_043247727.1 mRNA downstream 265379 17046467 ~ 17096790 (-) False LOC122350945
XM_043247402.1 mRNA downstream 526609 16763297 ~ 16835560 (-) True LOC122350717
XM_043247412.1 mRNA upstream 90638 17456142 ~ 17464579 (-) True rflna
XM_043246070.1 mRNA upstream 175322 17540826 ~ 17543078 (-) True prnpa
XM_043247723.1 mRNA upstream 187016 17552520 ~ 17567609 (-) True rassf2a
XM_043247724.1 mRNA upstream 187016 17552520 ~ 17563121 (-) False rassf2a
XM_043246760.1 mRNA upstream 203916 17569420 ~ 17597847 (-) False slc23a2
XR_006251564.1 other downstream 319 17359385 ~ 17361850 (-) False zgc:194007
XR_006251566.1 other downstream 319 17359385 ~ 17361850 (-) False zgc:194007
XR_006251565.1 other downstream 319 17359385 ~ 17361850 (-) True zgc:194007
TU95703 other downstream 18430 17323060 ~ 17343739 (-) False LOC122350953
TU95424 other downstream 952505 16407834 ~ 16409664 (-) False LOC122350093
XR_006251590.1 other upstream 741949 18107453 ~ 18112701 (-) False LOC122350290
TU96073 other upstream 789631 18155135 ~ 18157543 (-) True G64967
TU96164 other upstream 1194163 18559667 ~ 18560334 (-) True G65033
TU96415 other upstream 1665483 19030987 ~ 19039551 (-) False LOC122350102
XR_006251696.1 other upstream 1836773 19202277 ~ 19202377 (-) True LOC122351133

Expression Profile