RNA id: XM_043247320.1


Basic Information

Item Value
RNA id XM_043247320.1
length 4715
RNA type mRNA
GC content 0.45
exon number 4
gene id LOC122350644
representative True

Chromosome Information

Item Value
chromosome id NC_056706.1
NCBI id CM032075.1
chromosome length 24299999
location 13562956 ~ 13570832 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

AGAAGCTGACCAGTCGGACACTAGCCAACACTGTCCGTGAAAGATATAAAGCGGTATCTTGCTCTGGTAAGAGTGCCATCACCTGGTCAAAGGTGCTGAGTCTGAGAATGCGTCATACTATAGTTACGGTGTGGGGAGAGACACTACGTGACACCAGCAGCACCGCCCTAGACCTAGCCCTAATCCCACGTGAAGCTGTACAGAGAGCCTTCGTCGCCTTCCCATATCTTTTTTGCTACTGAGTGAGCCACACCCCTATGTGGTGTCTCCTTATACACATCAACGCAGCATGGTGTCAGATGTGGCTAGAACTGACTCCAGTACCTCATATGCTGCCAAATAGCTTTATAAGCACCACGTCTATGCAAAGCTGTAGTTTatcctaacaaaaaaaaacaaaaaaaaactaaagactgCTCACTACAGAAAGTGCCATGTGCAATATGGGAGGAAAGTCCCACCTTCTAACTGAAAGAGCCAATCATTGGGCTGGTAAATCCGTTGCGTTTCTAGGTCACAGGTTATCTTCAGCTGGGTTACAACCGGACCTAGACAGACTGGCTGCGATTCAAAATATGCATGGACCTACTAATGTGTCTGAGGAACTCAGCTTTCTGGGAATGATGAAGCAACTGGGGAAGTTCCAGAACTAGCTGAGAAAACAAAGCCCCTGCATGAAGAAAAGTCTGTGGTCCTGGGACGTTCAACAGCAGGAGTCATTCACAATGCTAATAAATGAGCTCATCACAGCACTAGCTTTAGCGATTTAGCGAAGGTCACAAAAGTCGCAGCAGATGGTTTGGTGTTTTGGTCTAGGAGGAGTGATCTATCAAAAGTTCAGTGATGCGTGGAAACCCGTAGCATACGCAGCTAGACTCCAACGAAGCAGAGATATGCCTAGATAAAGGAGTCCCTGGTTCTTGTTTATATTCGACGCAATAGACGGGCATTGGTTCAGATACACAACCCTGGGAAAAGAAACCATCCAGATATGGACCGGCCAAACTTATTCGAGGAGGATCACAGTCTGACAGCCACAGTTCAACGGCCAGCTTCAAGCCCACAGTTTCCTCTACCTACCAGACCATGAACATACACATGATCAGGACGTTTGTCTGTACCAGCCAAGATAAATGAATCTTTAGAATTGGCGAAAGctctgccatctagtggtgatTCATGCATATCATTTCATCTGTCAGAAACCCGGccctccaaaaacaaacaaaacacaagctCTCCATCGCTGACACTGTACAACTGATTCAGGTTGCATAACTTTCGAAACTATTCATGCAATTCTTAAAACAATATACGGATACACACAATTCacgtttttacacattttaattttgtttacaaaCCACTAAACAGACAATAACCCGATTTTACGCGGGTTCAGTCaagttttttcttcagaaaagatAAAGCACATAGCATAACAGACACAATCAATCCACACACGTTTATCCGTGTAAAAGGTAGTGAAATTGATGCCAAACTGGTCACAACTCtaggatttattaaaataaccacAAAGTTTAGGCATATGTTGTAAACAATAAAGCAGGcgatgaaagagagaaaaagaaagcgaCAAAGATGAATCAGAACTTGATTTCTGAGCAATGCATGTTTATAGAGAGTGAAAGAAAGGTGGCACAATTCTTAAAACTTGAGAAAAAATGATAGTGGACCACTTGTCTGACAGgcagactctctctcacacattaTTTAGTGCGTGCGCTCAGGCTGCACGCGGTCACGCAGCTGTGGAGGATCGCGCGGAATGTCTTGGCGCGCGGGCTCGAGCTGGAGCTCGCGAAAGGCGCTCTGAGCCGGAGACCCTCTGCTCCCCGTGCATTATGGATCTCAACATAGATACTCTTTAAACTAAAACAGATGCATCCCCGCAGAATAAACCTTTAAGCCTGACCGATCGACACTGAATATTTCCGAAGACAATGTCCGGACCACGGGTCTCGGCGAGTCAGGGGAGCGATGAGTCGGACACGGAGCTGCTGCTCGAGACGCTCTCGccggaggaggtggaggagctCGAGCGGGAGCTCGTTTACATCGACCCCGACCCTAACGTCCCGGTTGGACTCCTCCAGCGGAACCAGACAGACAAGCTGCCGTCCAGAGGCTACGACAGAGAGGCTATGCTCGACTACTGTGAGCGGGAGACCAAGAAACTGATCCGGAGAGAGCTGAGCGCAGAGGGAGGGGATGGCCGAAGGAGAGATCGACTTCGTCGGATGAGAAGCAGAGAGTTTTCCAGATCACAGAGCGGCGATCCTCCTGACACGGAGAGCAGAAATGCTGAGAGCCAAAAAGATCACGAGAGAGCAAGAAAAAATGAAGACGACTCTAAAAATATATCTGATGAAGATAAAAAAggcaaagagaagaaaagggaagaggaaaagacagaaagagagatgacAGGCAATAAGACAGAATGCGGAAAAGAGCTTtctagaaaagaaagagaaagcagcAAAACTCTAGATCTCATATCTAAACTACAAGAGAAAAAAGAtgataagaaagaaagagggagaaaggTGGAGAAAAAGGTGAGTGAAAACTCCAAAATACGAGGGTTTGTCTCCAAACTGCAAGAAACCGAAGACCTAAAAGTAAAAGACAATAAGGCAGATGTCAAGAAACAATATGAACCAAAGAACAACAGAGCAGAAGGAAGAGTACACATTAAAGATGTAGAAACAGATGAGAAGAAAAGCAATAGAAATATAGAAGAGAGAATCAAAAGAAGAGACATAGTAGAGGGGGATGAGAAGCGTCACTCACAGAGAGACACAACCAGAGCACAGAATGagaacaaaatacaaatgaatcaaTCAGAAAATGAGGTGAAAATATCTACCATTTCCAGCCACAAACCCTCACTGAAGTCTTGTGGAGTGGACGATCGTTCTGTTACGACTGAAGAGGACGAGTCCTTTAGTGAAGATGTGGATAGCGATACGGGCTCCAGCATGTTTGATGACCTTCTGGAGCAGGTTCGCAGCGATGACCCTGAACTAACAGAGCTCAACGTCAATAATTCAGATGCCATTAAGACAGACACTCTGATACAGTTTGCAGAAGGTCTTCGCAGCAACACTCACATCAAAACCTTCTGCCTTGCAAACACAAGAGCGGATGATCATGTCGCATTCGCCATCGCTGGAACCCTTCGAGATAATTGCACCCTGACCAGCATCAACCTCGACTCCAATCATTTAACAGGCAAAGGCATCCTGGCCATCATCAACTCTCTTCAGCACAACAGCATGCTTATGGAGCTGAGGTTTCATAACCAGAGACACATCCTCGGAGGAAAGACTGAAATGGAGATGGCAAAAGTCTTACGTGACAACTCTTCACTGCTGAAGCTGGGATATCACTTCGAGCTAGCCGGGCCCAGGATGACCATGACGAACATATTGAGCCGAAACATGGACAGGAAGAGGCAGCAACGCCTAGAAGCTCAAAAACTCGCCAGACAGGAGACGAACTCCGAGCCACGTGACGATAAGACATCAACTGAGAAGAATAAGCCAACAACATCGTCCATCAAAACTCAGAAAAAAGACTCTAAATTTACTGGCCTCTCAAAATTCACTTCTGCTCAGGAAACTCCCAAAGCTCCGCCCACAAAGTCACCTTCCAGACCCCTCCCATCTGCGGCaacaggaaagaaagaaggggcGATAGGAAGTCAACAAGCTCCTCTgccccctcctcctccacccCCTCCTGGCCCAGCGTTAGATGTTCAGGCCCTGAGGAGGTCACTGACCCCGATCTCTCAGAGGAAACCAGACGGCAGTGCAGCTGTCCGACACACGGACAGGAGCTCCAGAGATCAGCTTCTAGACTCTATCAGAAATTGCAGCATGAACGCTCTAAAAAAGGTGACACAGACATGTCATAGATGTTACTATGCCACAGCAGGAGTGTTGTGCGGTACAATATGAATACAGTTGAGATCCCTAAGCGGCTGAGATAGCATCTTCTGCCTTCAGATTCCCCTGCAGGCCTCCAGTGAATAACCCTTCTTATCTCAGACTCTCCCAAATGCAGCCAGTTTGGATTGTTTGATTTCTAAGCGTTTCAAGAGGGACACAGTCAACATTCAAGCTGTGGGAGGCATCTGTTTGGGTTTGAAGGACCCTCACAGAAAGATTGTTGTCAACTTTTTGCGTACTTTATAATATTCTTGAATATATGATATTGTAAAGTACTAATCATTACTTTGTTTAGTAAAACTCTtcaaatattcttcaaaaagcACCCAAGTATTGATCTGCTTTGTTTGTTAAATAGTAGGACATCGTTAGATCTGTAAACTGTTCTGATCGTGTATGTGATATTGTGTTCAATTTCATCAGTTTGGCCATAGATTTTTCATCTGGACTTTTAGTTGTTAGTTAAAGCTGTTGAAAATTATAttcactactgtttaaaaaaaacatttattttattaattatggtTTCATTCGTGAAATGTGTTAATTCGGGTAGCATTTATCTTAACTCTAAAATCAAGAAGAGAACAAGCACACCTGTATTTAATTGTGATCATTTAGACATCGCTTGAAAAATATGACCTACCTGGGATCTCTGCATGTACTCTTATCTGATGTGGATGTTTTGATTGTATTGCATAAAACctgattttatgaattttagCCGGATAACAA

Function

GO: NA

KEGG:

id description
K22030 LMOD; leiomodin

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU94394 lncRNA downstream 212685 13347624 ~ 13350271 (-) True G63751
TU94388 lncRNA downstream 230569 13332164 ~ 13332387 (-) True G63745
TU94378 lncRNA downstream 288088 13261692 ~ 13274868 (-) True G63735
TU94346 lncRNA downstream 316826 13185867 ~ 13246130 (-) False tafa3b
TU94341 lncRNA downstream 431739 13128190 ~ 13131217 (-) True G63711
XR_006251607.1 lncRNA upstream 49160 13619992 ~ 13682456 (-) True LOC122350567
TU94556 lncRNA upstream 117346 13688178 ~ 13693222 (-) True G63866
TU94557 lncRNA upstream 128825 13699657 ~ 13700068 (-) True G63867
TU94558 lncRNA upstream 140323 13711155 ~ 13712401 (-) True G63868
TU94559 lncRNA upstream 140323 13711155 ~ 13711368 (-) False G63868
XM_043246202.1 mRNA downstream 975 13558881 ~ 13561981 (-) True LOC122350012
XM_043246203.1 mRNA downstream 4493 13552468 ~ 13558463 (-) True LOC122350013
XM_043246205.1 mRNA downstream 8051 13552468 ~ 13554905 (-) False LOC122350013
XM_043246204.1 mRNA downstream 8066 13552468 ~ 13554890 (-) False LOC122350013
XM_043246207.1 mRNA downstream 11709 13545306 ~ 13551247 (-) True rap1aa
XM_043247318.1 mRNA upstream 247 13571079 ~ 13591176 (-) True kdm5bb
XM_043247319.1 mRNA upstream 247 13571079 ~ 13591175 (-) False kdm5bb
XM_043247324.1 mRNA upstream 22869 13593701 ~ 13597847 (-) True tuba5
XM_043247847.1 mRNA upstream 28418 13599250 ~ 13608277 (-) False LOC122351021
XM_043247848.1 mRNA upstream 28418 13599250 ~ 13608277 (-) True LOC122351021
XR_006251575.1 other downstream 1199861 12351246 ~ 12363095 (-) False kcnq2a
TU93842 other downstream 1298423 12263694 ~ 12264533 (-) True G63385
unassigned_transcript_1295 other downstream 1765754 11797130 ~ 11797202 (-) True trnaf-gaa_1
TU93692 other downstream 1783705 11778271 ~ 11779251 (-) True G63274
TU93426 other downstream 1998551 11562278 ~ 11564405 (-) False G63095
TU94636 other upstream 238596 13809428 ~ 13863250 (-) True G63933
XR_006251614.1 other upstream 1153376 14724208 ~ 14731391 (-) False slc20a1a
TU95023 other upstream 1208699 14779531 ~ 14781710 (-) True G64228
TU95181 other upstream 1713029 15283861 ~ 15284130 (-) True G64353
XR_006251609.1 other upstream 2078394 15649226 ~ 15700896 (-) False mvb12bb

Expression Profile