RNA id: XM_043247324.1


Basic Information

Item Value
RNA id XM_043247324.1
length 1809
RNA type mRNA
GC content 0.50
exon number 5
gene id tuba5
representative True

Chromosome Information

Item Value
chromosome id NC_056706.1
NCBI id CM032075.1
chromosome length 24299999
location 13593701 ~ 13597847 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

GAAGCGCGCGCCCCCGGCTCCTCATTGCTGTGTTGGCGGAGACACGTTACGCGTCTACACTCAACGGAGCTTAAAACGACTTTTGGTGATTTTTGCACCGAAATACTTTAACGTTTTCTCGAAAACTTGATCCCGCGAAACCTAAGTAAAAATGCGTGAATGCATCTCCATCCATGTGGGCCAGGCCGGCGTACAGATtggcaatgcatgctgggagttGTATTGCCTGGAGCATGGCATCCAGCCTGACGGCAATATGCCAAGTGACAAAACCATTGGTGGAGGAGACGACTCCTTTAACACTTTCTTCAGTGAGACTGGCTCTGGGAAGCATGTGCCACGAGCTGTGTTTGTGGATCTGGAACCTGCAGTCATTGatGAGGTGAGGAGTGGAACCTACAGACAGCTGTTTCACCCGGAGCAGCTCATTTCCGGGAAAGAAGATGCTGCCAACAATTATGCCCGTGGCCATTACACCGTTGGCAAGGAGATTATCGATATGGTGCTGGAGCGCGTCCGCAAACTGactGACCAGTGCACTGGACTCCAGGGTTTCCTGATTTTCCACAGTTTTGGTGGAGGCACTGGCTCTGGTTTCACATCCCTTCTGATGGAGCGTCTCTCAGTTGACTACGGCAAGAAGTCCAAGCTCGAATTTGCCATCTATCCTGCTCCTCAGGTCTCTACCGCTGTGGTCGAGCCATACAACTCCATCCTAACCACCCACACCACCCTAGAGCACTCTGACTGCGCCTTCATGGTAGATAACGAGGCCATCTATGACATCTGCCGCAGAAATCTCGACATCGAGCGTCCCACCTACACCAACCTCAACCGCCTGATTGGCCAGATTGTGTCCTCCATCACCGCTTCATTGCGCTTTGATGGTGCCCTCAACGTCGATCTGACAGAGTTCCAGACCAACCTGGTGCCATATCCCAGAATCCACTTCCCCCTGGTCACATACTCCCCCATCATCTCTGCTGAAAAGGCTTACCATGAGCAGCTGTCTGTGTCTGAGATCACCAGTGCCTGCTTTGAGCCATCCAATCAGATGGTGAAGTGTGACCCCCGGCATGGAAAGTACATGGCCTGCTGTATGCTGTATCGGGGTGATGTCGTACCCAAAGATGTGAATGCCGCTATTGCCAACATTAAGACCAAACGCTCAATCCAGTTTGTGGACTGGTGCCCAACTGGGTTCAAGGTTGGCATCAATTACCAGCCACCTACAGTGGTCCCTGGTGGAGACTTGGCCAAGGTACAGAGAGCTGTGTGCATGCTGAGCAACACCACTGCTATTGCAGAGGCCTGGGCCCGTCTGGACCACAAGTTCGATCTGATGTATGCCAAGCGTGCCTTTGTTCACTGGTATGTTGGAGAAGGAATGGAAGAGGGAGAGTTTTCTGAGGCCAGAGAGGATCTTGCAGCACTGGAGAAAGATTATGAGGAAGTTGGCGCTGAGTCTgtggaggatgaagaggagggAGAGGAGTATTAAAAGCCTTAAGCAACTGGTCTGACACCAGTTTACGGTCAGAAGAGAAACTGGTCCTACTTCAGCAGCACTTATAGCAGTATTTGCCTCTTCATTGCCAAGCTGCCTTTATGAATGCCTAATTATGGGGAACAAAGCCcttgtgtgtttataaatgttcTGTTTCGTTCTTTTTCTATACCTCCATTCTGTCTGATTTCAAAGAAATGAGTTGCCAAAGGCATTTCTCTCTGTGAACACTTTTTGTAAGCTGTCTTTGTCTCTCACATGCTGTAAGTGACACGGTTTCAGAAATAAACTtgtcaaatgtg

Function

GO:

id name namespace
GO:0007017 microtubule-based process biological_process
GO:0051258 protein polymerization biological_process
GO:0006184 obsolete GTP catabolic process biological_process
GO:0005874 microtubule cellular_component
GO:0005737 cytoplasm cellular_component
GO:0003924 GTPase activity molecular_function
GO:0005525 GTP binding molecular_function
GO:0005200 structural constituent of cytoskeleton molecular_function

KEGG:

id description
K07374 TUBA; tubulin alpha

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU94394 lncRNA downstream 243430 13347624 ~ 13350271 (-) True G63751
TU94388 lncRNA downstream 261314 13332164 ~ 13332387 (-) True G63745
TU94378 lncRNA downstream 318833 13261692 ~ 13274868 (-) True G63735
TU94346 lncRNA downstream 347571 13185867 ~ 13246130 (-) False tafa3b
TU94341 lncRNA downstream 462484 13128190 ~ 13131217 (-) True G63711
XR_006251607.1 lncRNA upstream 22145 13619992 ~ 13682456 (-) True LOC122350567
TU94556 lncRNA upstream 90331 13688178 ~ 13693222 (-) True G63866
TU94557 lncRNA upstream 101810 13699657 ~ 13700068 (-) True G63867
TU94558 lncRNA upstream 113308 13711155 ~ 13712401 (-) True G63868
TU94559 lncRNA upstream 113308 13711155 ~ 13711368 (-) False G63868
XM_043247318.1 mRNA downstream 2525 13571079 ~ 13591176 (-) True kdm5bb
XM_043247319.1 mRNA downstream 2526 13571079 ~ 13591175 (-) False kdm5bb
XM_043247321.1 mRNA downstream 22869 13562956 ~ 13570832 (-) False LOC122350644
XM_043247322.1 mRNA downstream 22869 13562956 ~ 13570832 (-) False LOC122350644
XM_043247320.1 mRNA downstream 22869 13562956 ~ 13570832 (-) True LOC122350644
XM_043247847.1 mRNA upstream 1403 13599250 ~ 13608277 (-) False LOC122351021
XM_043247848.1 mRNA upstream 1403 13599250 ~ 13608277 (-) True LOC122351021
XM_043247714.1 mRNA upstream 11007 13608854 ~ 13615338 (-) True adipor1b
XM_043247715.1 mRNA upstream 11007 13608854 ~ 13615332 (-) False adipor1b
XM_043247173.1 mRNA upstream 42098 13639945 ~ 13641482 (-) True cebpb
XR_006251575.1 other downstream 1230606 12351246 ~ 12363095 (-) False kcnq2a
TU93842 other downstream 1329168 12263694 ~ 12264533 (-) True G63385
unassigned_transcript_1295 other downstream 1796499 11797130 ~ 11797202 (-) True trnaf-gaa_1
TU93692 other downstream 1814450 11778271 ~ 11779251 (-) True G63274
TU93426 other downstream 2029296 11562278 ~ 11564405 (-) False G63095
TU94636 other upstream 211581 13809428 ~ 13863250 (-) True G63933
XR_006251614.1 other upstream 1126361 14724208 ~ 14731391 (-) False slc20a1a
TU95023 other upstream 1181684 14779531 ~ 14781710 (-) True G64228
TU95181 other upstream 1686014 15283861 ~ 15284130 (-) True G64353
XR_006251609.1 other upstream 2051379 15649226 ~ 15700896 (-) False mvb12bb

Expression Profile