RNA id: TU232121


Basic Information

Item Value
RNA id TU232121
length 525
lncRNA type inter_gene
GC content 0.45
exon number 1
gene id G204504
representative True

Chromosome Information

Item Value
chromosome id CI01000048
NCBI id null
chromosome length 1528931
location 561726 ~ 562250 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

AATAAATTCCTGTGTATTTCCTACCTGACAGGAAGGAATGCCACAGGTAAACATGACATTTATTTTAATGGATTATATATGTGTGTCACAGTCTCCGTCTGTCCTGGACTTCATTTCCCATCGTCCTCCCTGGCCCTCACCTGCACTCACTTCACCATCAGCTAATCTCACACACCTGTTCCCCATCAGCACTCAATCACATGACTATTTAAGCACACCACTCACCTCCCTCAGTTGTCCGGTCTCATTTATGCGTTTATACTAAGGACTATTCATGTTGATCTCCAAGACTTCTAAGATACTTACCTGTTCCACTCCAGCGTGTTTCCCCAGTCTCCGTGTTTTGTCGTCTGTGTGAGTTTACCCACCTTCAACGTGTGTTCATCCTGTCTACTGTCATCCATCCATCCACGATCTGCAAACCTGTAAGACAAAGGACTGTATCAGTGTTCAGCTAGCACTTTACTAAGATTCCATCTCCTACCCACTCACCTGCATTTACTGTGTTTATCCTGCTGTTTGTGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU232073 lncRNA upstream 14638 531657 ~ 547088 (+) True G204457
TU232077 lncRNA upstream 79478 432327 ~ 482248 (+) True G204461
TU232075 lncRNA upstream 90931 467709 ~ 470795 (+) True G204459
TU232069 lncRNA upstream 94921 464903 ~ 466805 (+) True G204454
TU232120 lncRNA upstream 152176 409272 ~ 409550 (+) True G204503
TU232123 lncRNA downstream 9497 571747 ~ 572993 (+) True G204506
TU232122 lncRNA downstream 10747 572997 ~ 575340 (+) True G204505
TU232124 lncRNA downstream 17215 579465 ~ 579735 (+) True G204507
TU232125 lncRNA downstream 17837 580087 ~ 580367 (+) True G204508
TU232126 lncRNA downstream 19413 581663 ~ 583190 (+) True G204509
CI01000048_00425103_00519682.mRNA mRNA upstream 41836 425103 ~ 519890 (+) True CI01000048_00425103_00519682
CI01000048_00403297_00404487.mRNA mRNA upstream 157112 403232 ~ 404614 (+) False CI01000048_00403297_00404487
CI01000048_00261577_00264226.mRNA mRNA upstream 296184 261400 ~ 265542 (+) False CI01000048_00261577_00264226
CI01000048_00149401_00154452.mRNA mRNA upstream 407274 149401 ~ 154452 (+) True CI01000048_00149401_00154452
CI01000048_00036432_00113057.mRNA mRNA upstream 448669 36432 ~ 113057 (+) True CI01000048_00036432_00113057
CI01000048_00567988_00568484.mRNA mRNA downstream 5738 567988 ~ 569052 (+) True CI01000048_00567988_00568484
CI01000048_00659494_00667971.mRNA mRNA downstream 96772 659022 ~ 669479 (+) False CI01000048_00659494_00667971
CI01000048_00693752_00694265.mRNA mRNA downstream 130822 693072 ~ 694348 (+) False CI01000048_00693752_00694265
CI01000048_00705234_00707566.mRNA mRNA downstream 142611 704861 ~ 707608 (+) True CI01000048_00705234_00707566
CI01000048_00713811_00714700.mRNA mRNA downstream 151229 713479 ~ 714947 (+) True CI01000048_00713811_00714700
TU232089 other upstream 200065 361025 ~ 361661 (+) True G204472
TU232014 other upstream 275979 285270 ~ 285747 (+) True G204409
TU231798 other upstream 498129 63188 ~ 63597 (+) True G204233
TU232180 other downstream 98469 660719 ~ 661856 (+) False CI01000048_00659494_00667971
TU232496 other downstream 431205 993455 ~ 993969 (+) False G204824
TU232648 other downstream 652122 1214372 ~ 1215807 (+) True CI01000048_01214358_01215546
TU232734 other downstream 820705 1382955 ~ 1383698 (+) True G205026

Expression Profile