RNA id: TU232126


Basic Information

Item Value
RNA id TU232126
length 875
lncRNA type intronic
GC content 0.40
exon number 2
gene id G204509
representative True

Chromosome Information

Item Value
chromosome id CI01000048
NCBI id null
chromosome length 1528931
location 581663 ~ 583190 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

TGTTTATTTCATTCTGTAATGTAGTAAAGAGGAAAGGATGATCGTGTTCACTCACGATCCTCGACAAGTGTTCAAGATGAATATAAATAAATGCATCGCCAAGGCCTATTTGCTTATCCCATAAGTTCGTGAATAAAAATGAAAATGTGGACGAAATCAGAAGCTGTTAAATGTCTTATCATTAAGCCTCCTTCATCACTTCTTTCATTAGCCTTGTGCTCAATTGCTGTGCTTTCCTTGCCTGACTTTGCTAGTTAGTTCCAGAATGTATTAGTAAGCCTGTTGAGAGTGTTTATCTTTGGGTGTTCATTTAAGTGTTTGGCACACACATTGGAATCTGCGGGACCCAGGCGTAGCACAGGGGCTCTACGGCGTCCTCTAGAATGGGGTCCGAAAACTTGGTCCATATATCAAACACACTTCCATGTATTAGTATGAAACTCAGTACACATATAGACCTCATCGAGCCGAGCAACTTTCGTGCTTTAAGTTATACACCAGCCCAACAGGAAGTCAGCTATTATGAGTTGTTTGAAAAACGCATGCTCAGGAATTTGATATACTCCTCCTAGGCATTTAATCCAATCATCACCAAACTCGGTCAGCATGAAGCCAAGACATTGATGATGTTAAATTGCAAGCAGATTTTTGATATCTCAAACGGTTTGGCTGTGGTGAGGCAATGAATTTATGGCGAGAAAAGGGAAACAGGAAGTGTGTTGTAACTTTTGCATACATTGATTGATTTTGATGAAACTTTAGCTGTGTGTTCGTCGTAGTCTGATCACATGGATGTGACTATTGTGAGTCAAAGTTATAGCACCACCAACTGGCAGCAGGAAGTGTGTTACTTTCAAAATGCTTTAAGATCACCC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU232125 lncRNA upstream 1296 580087 ~ 580367 (+) True G204508
TU232124 lncRNA upstream 1928 579465 ~ 579735 (+) True G204507
TU232122 lncRNA upstream 6323 572997 ~ 575340 (+) True G204505
TU232123 lncRNA upstream 8670 571747 ~ 572993 (+) True G204506
TU232121 lncRNA upstream 19413 561726 ~ 562250 (+) True G204504
TU232127 lncRNA downstream 76 583266 ~ 583633 (+) True G204510
TU232076 lncRNA downstream 1491 584681 ~ 585147 (+) True G204460
TU232129 lncRNA downstream 4700 587890 ~ 588099 (+) True G204512
TU232130 lncRNA downstream 5037 588227 ~ 588452 (+) True G204513
TU232131 lncRNA downstream 9693 592883 ~ 593484 (+) True G204514
CI01000048_00567988_00568484.mRNA mRNA upstream 12611 567988 ~ 569052 (+) True CI01000048_00567988_00568484
CI01000048_00425103_00519682.mRNA mRNA upstream 61773 425103 ~ 519890 (+) True CI01000048_00425103_00519682
CI01000048_00403297_00404487.mRNA mRNA upstream 177049 403232 ~ 404614 (+) False CI01000048_00403297_00404487
CI01000048_00261577_00264226.mRNA mRNA upstream 316121 261400 ~ 265542 (+) False CI01000048_00261577_00264226
CI01000048_00149401_00154452.mRNA mRNA upstream 427211 149401 ~ 154452 (+) True CI01000048_00149401_00154452
CI01000048_00659494_00667971.mRNA mRNA downstream 75832 659022 ~ 669479 (+) False CI01000048_00659494_00667971
CI01000048_00693752_00694265.mRNA mRNA downstream 109882 693072 ~ 694348 (+) False CI01000048_00693752_00694265
CI01000048_00705234_00707566.mRNA mRNA downstream 121671 704861 ~ 707608 (+) True CI01000048_00705234_00707566
CI01000048_00713811_00714700.mRNA mRNA downstream 130289 713479 ~ 714947 (+) True CI01000048_00713811_00714700
CI01000048_00809677_00812096.mRNA mRNA downstream 226487 809677 ~ 813160 (+) True CI01000048_00809677_00812096
TU232089 other upstream 220002 361025 ~ 361661 (+) True G204472
TU232014 other upstream 295916 285270 ~ 285747 (+) True G204409
TU231798 other upstream 518066 63188 ~ 63597 (+) True G204233
TU232180 other downstream 77529 660719 ~ 661856 (+) False CI01000048_00659494_00667971
TU232496 other downstream 410265 993455 ~ 993969 (+) False G204824
TU232648 other downstream 631182 1214372 ~ 1215807 (+) True CI01000048_01214358_01215546
TU232734 other downstream 799765 1382955 ~ 1383698 (+) True G205026

Expression Profile