RNA id: TCONS_00018816


Basic Information

Item Value
RNA id TCONS_00018816
length 1004
lncRNA type antisense_over
GC content 0.41
exon number 4
gene id XLOC_009083
representative False

Chromosome Information

Item Value
chromosome id NC_007126.7
NCBI id CM002899.2
chromosome length 48040578
location 15303727 ~ 15307751 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

TTGGAGAGTTTGAACAACACACAGCTTCTGGAGCTCTTGGAAGACGAGGAAAGGATGAGAGAAACCATCAGGGTCAATTTAAagTTACAGCATCTTCAGAGGAGTAAGAAGATTTTGGTGGCGTCCAACTGTTGGCTGGCAGAGCAGAATTTAACACATCAGCCACGTCTGAATACCTCTAAGCTGCTTTTAGCTGAAAAGTACCAGATTCTTGGTCAGATCGTCTCTTCAGCGCAACGAAAACAAAGAAAGCTGGAAACTTTCCAGCAGAAACTCAACCTCAGAGCTATTCAGAAGCGTCTGAAGGAGAAAATCCGTCACTCGGCTAGTCAATCCGAGAATCTCTGGCAGAAGTTCACCGAAGGAAAACTTTTGCTCACAGACTTCGTTGAATTGCTTCAAAACGCTCAGGCATTGTGCCATCGACGCCTTCTTCAAGCTGAAAAGATCCACAATCTCATCATACACGCACAAATGTACCATCAAAACGCTGATTTTTCGAACGGTTTCCCTCATCTATCGACCACAATCAATGTTTTCAGTGGTGTGTCTCCAGTGTTTTTGCTGCCTGGTTTCCAGTCTCCTCATTTTTCTTCAACATTATTTCTTCCTCCTCTAAAGCATCATACATTTGGATTCCCGACTCTGCCATCCCAAAATGAATTGAGCCACAAAcaagatgtgtgtaaatgcagcGACCAGTGGCCACAAAGACATGCTGCTTTACAGCCACTAGACAGGAATCAACCAAACACCCCACTAAAAGAGTACTGATACCATGGGACTATAAAAACAAGTTATACATGTTTCTGGTAAACCACTATAAACAGAGATGGTCATTTgcaaattttcacatttttttctggatttataatttataattatgtgtttgagtaaaatattgttttatactgtaaatactgATGACTCCTCTTCCATATGGCCTATGCTGTATATTAGATATGTTCAGAAAACataataccaacattttaacacaagagttc

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00017892 lncRNA downstream 76677 15224331 ~ 15227050 (-) True XLOC_009082
TCONS_00019133 lncRNA downstream 273336 15028212 ~ 15030391 (-) True XLOC_009081
TCONS_00017888 lncRNA downstream 419666 14883291 ~ 14884061 (-) True XLOC_009080
TCONS_00017885 lncRNA downstream 606952 14680055 ~ 14696775 (-) True XLOC_009077
TCONS_00017870 lncRNA downstream 1055680 14246090 ~ 14248047 (-) True XLOC_009069
TCONS_00019134 lncRNA upstream 66326 15374059 ~ 15375518 (-) True XLOC_009085
TCONS_00019135 lncRNA upstream 73755 15381488 ~ 15386169 (-) False XLOC_009086
TCONS_00019136 lncRNA upstream 73755 15381488 ~ 15387422 (-) False XLOC_009086
TCONS_00017895 lncRNA upstream 76161 15383894 ~ 15384011 (-) False XLOC_009086
TCONS_00017901 lncRNA upstream 154598 15462331 ~ 15469096 (-) True XLOC_009088
TCONS_00017889 mRNA downstream 73463 15221123 ~ 15230264 (-) False XLOC_009082
TCONS_00017890 mRNA downstream 76186 15221421 ~ 15227541 (-) False XLOC_009082
TCONS_00017887 mRNA downstream 419395 14875726 ~ 14884332 (-) True XLOC_009079
TCONS_00017886 mRNA downstream 523125 14776854 ~ 14780602 (-) True XLOC_009078
TCONS_00017884 mRNA downstream 548409 14676120 ~ 14755318 (-) False XLOC_009077
TCONS_00017894 mRNA upstream 40757 15348490 ~ 15357178 (-) True XLOC_009084
TCONS_00017897 mRNA upstream 137380 15445113 ~ 15449929 (-) True XLOC_009087
TCONS_00017898 mRNA upstream 152241 15459974 ~ 15469096 (-) False XLOC_009088
TCONS_00017899 mRNA upstream 152819 15460552 ~ 15468326 (-) False XLOC_009088
TCONS_00017900 mRNA upstream 152876 15460609 ~ 15469079 (-) False XLOC_009088
TCONS_00017891 other downstream 79025 15221483 ~ 15224702 (-) False XLOC_009082
TCONS_00017882 other downstream 667942 14635669 ~ 14635785 (-) True XLOC_009076
TCONS_00017874 other downstream 988257 14315354 ~ 14315470 (-) True XLOC_009071
TCONS_00017866 other downstream 1109831 14185388 ~ 14193896 (-) False XLOC_009066
TCONS_00017858 other downstream 1220614 14076539 ~ 14083113 (-) False XLOC_009064
TCONS_00017896 other upstream 76165 15383898 ~ 15383983 (-) True XLOC_009086
TCONS_00017917 other upstream 651643 15959376 ~ 15960468 (-) True XLOC_009094
TCONS_00017936 other upstream 1486378 16794111 ~ 16872600 (-) True XLOC_009108
TCONS_00017944 other upstream 1753844 17061577 ~ 17071246 (-) False XLOC_009112
TCONS_00017972 other upstream 2675832 17983565 ~ 18002215 (-) False XLOC_009128

Expression Profile

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