RNA id: CI01000299_00042567_00045857.mRNA


Basic Information

Item Value
RNA id CI01000299_00042567_00045857.mRNA
length 1344
RNA type mRNA
GC content 0.38
exon number 7
gene id CI01000299_00042567_00045857
representative False

Chromosome Information

Item Value
chromosome id CI01000299
NCBI id null
chromosome length 6567443
location 42454 ~ 46191 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

ATATATATAAAACTGTCTAAGGTTGATTTCACTTGCTTAAAGTGAGATACAAGTCAACCGTGTTCCAGGACAGAGCTGATGTAAATATATTGAAGGGGAAAAACAAACAAAAAATGGGAGGATCAGAATCAAAGTCAGTGCAACAAGTGACCCAATCAATAGTGCATCAATCAAAACCAAATCCAGAACTGGATAAACCATGGAGGAAATTCGACTGGGGACAGAAAGAAGCTCTGAAAAAGAAGCTGGAAAACTTCTCTCCGAGTGATCCAAATGTAAACGACATCAAGATCCTGGTAGCTGGACAAGTTGGAGCAGGAAAGTCCAGCTTTATCAACTCCATCGATAGTGTCTTTCAAGGACGGATCTGCTCTAGAGCACTAGTTAATACAGCTGATGGTGACAGTCGTAGTTTCACACAAAAGCTCAAAGGATTCCCCATCAGAAGTGGGAGAAAAACTTTGCCTTTCGTCTTCAAGGATATAATGGGCTTAGAAGCTGAAGCTTTGGCTGGGTCACAAACAGATGACATCATCAATGCTGTGTTTGGCCATGTGAAGGACGGCTATAAATTCAATGAGGAGCAGGCACTCACTTATAAGGATCAGCATTACACCAGTGACCCTACCCTCTCCGATCAGGCTTTCTGCCTGGTTTATGTCATAGCCGCAGATACAGTCCAATTCACAGATGATCGACTTATTGACAAGTTGAAGATCATCCGCAAGAGAATCAGTGATAAGGGGATTCCTCAAGTGATTGTCCTGACCAAAGTGGATGAAGTATGTCCGCTGGTCAACAAGGATCTAAGGAAGATCTACACTAGCAAGAAGATCAAAGAGAAGATGGAGTTGTGCAGTGCTAAACTGGGTGTGCCATTGACAAACATCTTCCCAGTGAAGAACTACCATGATGAGATTGACACAGAGGATGACATTGATGTTCTGACACTGAAGGCACTTGAACAGATTGTTCAGATTGCAGATGATAGATTGTTGGACAACTTCTGACAAAATCAAAAATATACAGTTATTAATGCATATAAATCACATCACAAAATCACATATAATGCATTTGGAGTGGGTCATTCTTTGAATTTCTTCATCAGAGGAACATCATTTTAGGAAGATCATGGATTAAATGACTATAGAGAGGATTATGTTTTGTGTTTGGTTTTACAATTATATCTACAGTCGGGTTCAAAATCAATGAAAATCTAGGACTCAAAATCTAATGTAAACCTGAAAATTAAAAGAAAGATTCAGAATTTGAAAATTGTTTAAAAAAATGTATGATGTAAAATCTTTCTCCATTTAACAATATTAAAACTTTTAAAACACATAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU463914 lncRNA downstream 14228 60419 ~ 162795 (+) True G403595
TU464350 lncRNA downstream 504310 550501 ~ 550742 (+) True G403952
TU464363 lncRNA downstream 536565 582756 ~ 583123 (+) True G403965
TU464369 lncRNA downstream 556641 602832 ~ 603583 (+) True G403971
TU464416 lncRNA downstream 603224 649415 ~ 649814 (+) True G404016
CI01000299_00013442_00032151.mRNA mRNA upstream 9380 12783 ~ 33074 (+) True CI01000299_00013442_00032151
CI01000299_00005753_00010092.mRNA mRNA upstream 32229 5635 ~ 10225 (+) True CI01000299_00005753_00010092
CI01000299_00053877_00063101.mRNA mRNA downstream 5760 51951 ~ 63500 (+) True CI01000299_00053877_00063101
CI01000299_00069742_00072011.mRNA mRNA downstream 23451 69642 ~ 72084 (+) False CI01000299_00069742_00072011
CI01000299_00082987_00089134.mRNA mRNA downstream 36532 82723 ~ 89594 (+) True CI01000299_00082987_00089134
CI01000299_00097393_00132755.mRNA mRNA downstream 51202 97393 ~ 132755 (+) True CI01000299_00097393_00132755
CI01000299_00151569_00153623.mRNA mRNA downstream 105328 151519 ~ 154472 (+) True CI01000299_00151569_00153623
TU463889 other downstream 23483 72177 ~ 72271 (+) True G403578
TU463930 other downstream 317948 364139 ~ 410788 (+) True G403609
TU464370 other downstream 558679 604870 ~ 606350 (+) True G403972
TU466101 other downstream 3108406 3154597 ~ 3155174 (+) True G405609
TU466041 other downstream 4085067 4131258 ~ 4133941 (+) True CI01000299_04131136_04133439

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
zebrafish (Danio rerio) TCONS_00001567 True 1221 mRNA 0.41 7 NC_007112.7 7946842 ~ 7951002 (-)