RNA id: CI01000299_00053877_00063101.mRNA


Basic Information

Item Value
RNA id CI01000299_00053877_00063101.mRNA
length 3057
RNA type mRNA
GC content 0.34
exon number 7
gene id CI01000299_00053877_00063101
representative True

Chromosome Information

Item Value
chromosome id CI01000299
NCBI id null
chromosome length 6567443
location 51951 ~ 63500 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

GTATAAATAAAATTATAACACGCTGAATAATGACAGTTACTAAATTTACTAAGAATGATTATTATAGTTAAATAAAAACCTGGAAAAAAGATTTCCTCCATCAACGATGTCCATTGGGTTAACAATTACTCTTAGTTTGAAATATAAAACACCCAACATGTTCAGACATATTGGGGTTTCCATGTTTTATGCACGGTTTATGCAGACTTTTTTCTTTTTCTGTATAATCTGACCCCATCTATCACAGTAAACGTTTTTCATTTTTATATTCTCAAAACGTCATTTAGTATAAATTATAATTTGAAAAGTTGTTTTGCAAATGGGGATACATTTTGCTAGTTAAATAAAAAATATAAAAACATTTGCTTTTAGTTTATACTGAAATCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCACACACACACACACACCCACACAGACACACACACACACACACACACACACACAGGTTTCAAAAGTGAAAAACATTCTCTTCTTTTAAATGATTATAAAATAATTTATAAAATGTTATTTATAAAACAACTCACATTTTTCAGAGAGGAGCACTCCTTAACATGAATAGCAGAATGCAATAAAGTTGAAATCTAAAAAATCTCTCTCTCTCTCACACACACACACACACACACACACACACATTTCAAAAACTGAAAAACATTCTGTTCTTTTAAGGAAGATGGTGAGAACTGTAATCCTGTCACGTTTTTGTTTTGTAATGTACAAATGGGGAGGTAAACAATTACACGTAAGGTTAACGAATTGGAAAATCAATATACACCCAAATGAAATGTATGTGTTCACGTGCTCGCAAATGAATATATGTATGTGTATGAATTTACTTGCATTACTTGCACTAAGTATGTCACAGATTAAGTTTGTCAACTGGAATGTGAGGGGCATCAATTCACCAATTAAAAGAAATAAGATACTAAACTACCTTAAAAAACTAAATGCTGATATACAGGTGCTGGTCATATAATTAGAATATCATCAAAAAGTTGATTTATTTCACTAATTCCATTCAAAAAGTGAAAATTGTATATTATATTCATTCATTACACACAGACTGATATATTTCAAATGTTTATTTCTTTTAATTTTGATGATTATAACTGACAACTAAGGAAAATCCCAAATTCAGTATCTCAGAAAATTTGAATATTACTTTTTAAGACCAATAAGACCAATACAAAGAAAGGATTTTTAGAAATCTTGGCCAACCGAAAAGTATGAACAGCCTACCCTACCTTTAAGAACAAAGAAAGCAGCAGGTATATTGGTCTGCCGTCACTTTAAAAGCGAATGCATGGATCCAATAAACTGATAAACATTCTATTTTCTCCCAACTTTTTATGTTTACTTAATACATATGTTTATGTGGGTTTATGTGAATACTCACAAGCCCGGCAGTTTGACATATTTTTGCGTGTATTTGACCATTTAGGCAAGTTCACTTTGCTTGTCCTTGTACCACTCCATCTCAGAGCATGCACACAGAAAACTGCCTGAGGAACAGCCTGATATTGTACCCAAAAAGGCTTCATGTAAGCACCCTGCTTCCAAAGGTCCTCAAAGGAAAGGAAGAAAAAAAAATATATATATATATTTATATATCCCTTTTCAGCTTTCTTTTTAAAAAGTAGGTTTTTTTTTTTTTTAATAGCTTTTTAAAAGTTATCAACAAATCAGTTTTTTGCTTCGTCATTATGGGGTATAGAGTGTAGACTGATGTGAAAAGAAAAAGAATGGGTGTGGGCAGATTTAATTATGTATGAAAGCTTGCAAAAATGAAAGTGAAACTGAAATAGAGATTGAAATTCACTTGCAGTTAGATACAGTAACACAAGCCAGCTGTGTTCCAGGACAGAGCTGATATAAATATATCGAAGGAGGGGGAAAAAAAATGGAAATATTTAACCCAAATACAGAACCGGAACCAAATCCAGAACTGGATATACCATGGAGACACTTTGACTGGGGACAGAAAGAAGCTCTGAAAGAAAAGCTGGAAAACTTCTCTCCGAGTGATTCAGATGTAAACCACATCAAGATCCTGGTAGCTGGACAAGTTGGAGCAGGAATGTCCAGCTTTATCAACTCCATCGATAGTGTCTTTCAAGGACGGATCTCCTCTAGAGTGTTAGTTAGTTCTGCTGATGGTGACAGTCGTAGTTTCACACAAAAACTCACAGGATTCCCCATCAGAAGTGGGGAAAAATCTTTGCCCTTCGTCTTCATGGACACAAAGGGTTTACAACCTCCTGCGTTGGCTGGGTCACAAACAGATGACATCATCAATGCTGTGTTTGGCCATGTGAAGGACGGCTATAAAAGCCTTTACATTGCCTCTGCATTTGCTGTAGGGATTCCTCAAGTGGTTGTCATGACCAAAGTGGATGAAGCATGTCCGCTGGTCAACAAGGATCTAAGGAAGATCTACACTAGCAAGAAGATCAAAGAGAAGATGGAGTTGTGCAGCACCAAAGTAGGTGTGCCATTGTCAAACATCTTCCCAGTGAAGAACTACCACGAGGAGATTGACACAGAGGATGACATTGATGTTCTGATACTAAAGGCACTTGAACAGATTGTTCAGATTGCAGATGATAGATTGTTGGACAGGGAAATCTACTGACAAAATCACATATATACAGTTATTAATGCATATAAATCACATCATAAAATCACATATAATGCATTTGGAGTGGGTCATTTTCTTTATCAGAGGAACATCATTTTAGGAAGATTGTGAATTAAAATGACTATAAAGAGGATTATGTTTTGTGTTTAGTTTTCAAATATATCTACAGTCAGGTTCAAAGTCAATGAAAATCTGGGACTCAAAACTAATGTAAACCTGAAAATTAATAGAAAGATTCAGAAGTTGAAAATTGTTTAGGAAAAGTTATGTAAAATATTTCTACATTTAACAACATTAAAACTATTAAAATATATAAATAAATAATATGGGACTTTGTGTTTTAGATTCTTCAAAACATGAACAAAATAACTTTTGCTTATTGAGATCTGATGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU464350 lncRNA downstream 487001 550501 ~ 550742 (+) True G403952
TU464363 lncRNA downstream 519256 582756 ~ 583123 (+) True G403965
TU464369 lncRNA downstream 539332 602832 ~ 603583 (+) True G403971
TU464416 lncRNA downstream 585915 649415 ~ 649814 (+) True G404016
TU464546 lncRNA downstream 1007108 1070608 ~ 1075893 (+) False G404137
CI01000299_00042567_00045857.mRNA mRNA upstream 5760 42454 ~ 46191 (+) False CI01000299_00042567_00045857
CI01000299_00013442_00032151.mRNA mRNA upstream 18877 12783 ~ 33074 (+) True CI01000299_00013442_00032151
CI01000299_00005753_00010092.mRNA mRNA upstream 41726 5635 ~ 10225 (+) True CI01000299_00005753_00010092
CI01000299_00069742_00072011.mRNA mRNA downstream 6142 69642 ~ 72084 (+) False CI01000299_00069742_00072011
CI01000299_00082987_00089134.mRNA mRNA downstream 19223 82723 ~ 89594 (+) True CI01000299_00082987_00089134
CI01000299_00097393_00132755.mRNA mRNA downstream 33893 97393 ~ 132755 (+) True CI01000299_00097393_00132755
CI01000299_00151569_00153623.mRNA mRNA downstream 88019 151519 ~ 154472 (+) True CI01000299_00151569_00153623
CI01000299_00255175_00294177.mRNA mRNA downstream 191675 255175 ~ 294177 (+) True CI01000299_00255175_00294177
TU463889 other downstream 6174 72177 ~ 72271 (+) True G403578
TU463930 other downstream 300639 364139 ~ 410788 (+) True G403609
TU464370 other downstream 541370 604870 ~ 606350 (+) True G403972
TU466101 other downstream 3091097 3154597 ~ 3155174 (+) True G405609
TU466041 other downstream 4067758 4131258 ~ 4133941 (+) True CI01000299_04131136_04133439

Expression Profile