RNA id: TU465145


Basic Information

Item Value
RNA id TU465145
length 341
lncRNA type inter_gene
GC content 0.63
exon number 1
gene id G404709
representative True

Chromosome Information

Item Value
chromosome id CI01000299
NCBI id null
chromosome length 6567443
location 1604343 ~ 1604683 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

GAAGGCGTGAGCCAGGCCTCGGACCAGGACCTCTCCCCTTCCGCCGCCCCCGGTCTTCGAGGTCTCGACGAGGAACCGCTTCTCCCCTCTTCGCGAGGCAGAACGCGACGCCGTGGTCATCGGAGACTCCATCGTCCGTCACGTCCACGCTACCACAACCAAAGGTAAGGTGCGCAGTCACTGTTTTCCTGGTGCTCGTGTTCTCGATGTCTCTGCGCAGGTTCCCGCGATCCTGAATGGCGCTGAGAGCATCGGAGCTGTTGTTCTGCACGTGGGGGTGAACGACACCAGGCCGCGGCAGACGGAGGTGCTGAAGCAGGACTTCAGGAGCCTGATCGAGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU465036 lncRNA upstream 200331 1403757 ~ 1404012 (+) True G404603
TU464976 lncRNA upstream 287740 1316276 ~ 1316603 (+) True G404544
TU464856 lncRNA upstream 392472 1211655 ~ 1211871 (+) True G404436
TU464803 lncRNA upstream 405993 1197950 ~ 1198350 (+) True CI01000299_01197545_01215711
TU464844 lncRNA upstream 408607 1195477 ~ 1195736 (+) True G404424
TU465152 lncRNA downstream 27161 1631844 ~ 1632212 (+) False G404716
TU465155 lncRNA downstream 27161 1631844 ~ 1632341 (+) True G404716
TU465174 lncRNA downstream 83196 1687879 ~ 1689001 (+) True G404735
TU465177 lncRNA downstream 95557 1700240 ~ 1700456 (+) True G404738
TU465261 lncRNA downstream 140959 1745642 ~ 1745881 (+) True G404820
CI01000299_01197545_01215711.mRNA mRNA upstream 388354 1197422 ~ 1215989 (+) False CI01000299_01197545_01215711
CI01000299_01139684_01147241.mRNA mRNA upstream 457095 1139497 ~ 1147248 (+) True CI01000299_01139684_01147241
CI01000299_01049508_01055558.mRNA mRNA upstream 548607 1049390 ~ 1055736 (+) True CI01000299_01049508_01055558
CI01000299_01036243_01046776.mRNA mRNA upstream 556740 1035037 ~ 1047603 (+) True CI01000299_01036243_01046776
CI01000299_00862803_00911972.mRNA mRNA upstream 692371 862803 ~ 911972 (+) True CI01000299_00862803_00911972
CI01000299_01855614_01858092.mRNA mRNA downstream 250931 1855614 ~ 1858703 (+) True CI01000299_01855614_01858092
CI01000299_02118245_02120332.mRNA mRNA downstream 512178 2116861 ~ 2121858 (+) True CI01000299_02118245_02120332
CI01000299_02195854_02198465.mRNA mRNA downstream 591115 2195798 ~ 2198925 (+) True CI01000299_02195854_02198465
CI01000299_02612562_02613926.mRNA mRNA downstream 1007816 2612499 ~ 2614792 (+) True CI01000299_02612562_02613926
CI01000299_02696797_02704180.mRNA mRNA downstream 1091949 2696632 ~ 2704220 (+) True CI01000299_02696797_02704180
TU464370 other upstream 997993 604870 ~ 606350 (+) True G403972
TU463930 other upstream 1193555 364139 ~ 410788 (+) True G403609
TU463894 other upstream 1532072 35462 ~ 72271 (+) True G403578
TU466101 other downstream 1549914 3154597 ~ 3155174 (+) True G405609
TU466041 other downstream 2526575 4131258 ~ 4133941 (+) True CI01000299_04131136_04133439
TU466350 other downstream 2690850 4295533 ~ 4320141 (+) True G405842
TU466383 other downstream 2885135 4505404 ~ 4505917 (+) True G405866
TU466374 other downstream 3097699 4702382 ~ 4702508 (+) True G405864

Expression Profile