RNA id: TU104496



Basic Information


Item Value
RNA id TU104496
length 1166
lncRNA type intronic
GC content 0.43
exon number 2
gene id G94762
representative True

Chromosome Information


Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 84046183 ~ 84047430 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


TCTACCTGCTCTTTCTCTACCTGCTCTCTACCTAATTGCTCTCTCTACCTGTTATCTCtctacctgctctctctctacctgttctctatCTACCTGCTCTCTAtctacctgctctctctctacctgctctctatctacctgctctctctctacctgatcTCTACCTACCTGCTCTCTAtctacctgctctctctctacctgttctctatCTACCTGCTGTCTATCTACCTGTTCTCACTCTACCTGTTTTCCCTACCTGATCTCTCTCTACCTGATCTCTACCTACCTGCACTCTATCTAATTGCTCTATCTACCTGTTCTCTATCTACCTGTTTTCTAcctacctgttctctctctacctgctctcTATCTACCTGCTCTCTATCTACCTGTTCTCTATCTACCTGTTTTCTAcctacctgttctctctctacctgctctcTATCTACCTGCTCTCTACCTACCTGCTCTTTAACAGTACTCCCACTCTCTAGCTGTGGGCCACAGCAATAGCCTGTACCTATCATATGTAGTGTGAATAGTGACTCAATGTTGATGATGCACATTATACATTTGATGCATGGCCACAGTTTGACACAATCATGGTTCAAGTGTATATAGCACcaggtcaatcaatcaaatcaggtgggtgcaattcattatcaggtaggACAAAAAAACAGCATTAGTCCGGGCCTCGTAGGGTAGCATCTGAATACCCTGGTATATAGTATGctatacaacaggtgggtctaatcctgaatgcttatttgttaaaaccgcattccagctggCTAACGGTTAAAACCGTTACCAACGGCTAAATcgatgatgttaaaatgcctatttactctgttccatctgactgcataatccactgtctcatcagcccagccaggtatTTATAAagttgatctccactataaaaagcatctattCACACtacatatgagagagagagaggggcgaggtgGAGAGAGTGGTAATGATGAGAGCCTGCCACatgacattatctcacatttcttttagactgtGTTTAGTTTttaacagcggagatttgtataaatctTGCAAATGTCGGATagacgtccatagatacagaacaaaaagactgaacgactgggtcacgtccatagatacagatcaaaatgactgaacaactgggt

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU104492 lncRNA downstream 2876 84042636 ~ 84043307 (-) True G94759
TU104428 lncRNA downstream 69368 83976597 ~ 83976815 (-) True G94708
TU104427 lncRNA downstream 70910 83975012 ~ 83975273 (-) True G94707
TU104422 lncRNA downstream 77080 83968827 ~ 83969103 (-) True G94702
TU104413 lncRNA downstream 87336 83958608 ~ 83958847 (-) True G94693
TU104456 lncRNA upstream 64567 84111997 ~ 84113710 (-) True G94726
TU104519 lncRNA upstream 67349 84114779 ~ 84115147 (-) True G94783
TU104522 lncRNA upstream 70548 84117978 ~ 84118226 (-) True G94786
TU104526 lncRNA upstream 74362 84121792 ~ 84122010 (-) True G94790
TU104319 lncRNA upstream 103926 84151356 ~ 84152116 (-) True G94609
LOC110532804 mRNA downstream 78678 83966165 ~ 83967505 (-) True LOC110532804
XM_021614203.2 mRNA downstream 89225 83951057 ~ 83956958 (-) True si:ch211-198a12.6
XM_021614159.2 mRNA downstream 204290 83826949 ~ 83841893 (-) False LOC110530866
XM_036987189.1 mRNA downstream 324269 83713352 ~ 83721914 (-) False LOC110530770
XM_036987183.1 mRNA downstream 324669 83713352 ~ 83721514 (-) False LOC110530770
XR_002474617.2 mRNA upstream 50197 84097627 ~ 84110671 (-) False LOC110530947
XM_021614242.2 mRNA upstream 50199 84097629 ~ 84110671 (-) True LOC110530947
XR_005053182.1 mRNA upstream 75261 84122691 ~ 84126832 (-) True LOC110531009
XM_021614340.2 mRNA upstream 110099 84157529 ~ 84197300 (-) False LOC110531033
XM_021614317.2 mRNA upstream 110099 84157529 ~ 84256948 (-) False LOC110531033
TU104323 other downstream 243712 83801332 ~ 83802471 (-) True G94613
TU103830 other downstream 560246 83484056 ~ 83485937 (-) True G94201
TU103453 other downstream 1084861 82949614 ~ 82961322 (-) False LOC100301648
TU104308 other upstream 111393 84158823 ~ 84160764 (-) False LOC110531033
TU104309 other upstream 111393 84158823 ~ 84160764 (-) True LOC110531033
TU104557 other upstream 156057 84203487 ~ 84204464 (-) True G94821
TU104675 other upstream 244330 84291760 ~ 84292623 (-) False LOC110532813
TU104684 other upstream 244330 84291760 ~ 84293583 (-) False LOC110532813

Expression Profile