RNA id: TCONS_00002300


Basic Information

Item Value
RNA id TCONS_00002300
length 2948
RNA type mRNA
GC content 0.46
exon number 10
gene id XLOC_001399
representative False

Chromosome Information

Item Value
chromosome id NC_007112.7
NCBI id CM002885.2
chromosome length 59578282
location 41142881 ~ 41192206 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

TGCATGTGTGAGTATTGTGGGGGAGAGAGAGTTTGCGTGTGTGTTACAGCAGAGCAGACAGTGAATTCTGGAGGTTATTTTGAAAGTGAccccctcactcactcactgccgCGGACCGCACACAGCTGTCGGGAAACATGACACAAGATGACGGATACGGTTGTCGTAGAGGGACAAGTCAAACTCCGAGAAGGCAAAAAGTGGAAAAACAGATGGGTGATTCTTCGGAAACCTTCGCCGGTAGCAGACTGCCTGTCCTTGCTGGTGTATAAGGAGCGGGGAGAGAAAAGCAAAGGACAGCGAGAGAGGAATCAGGCCACACTGAGGGATATCTGTGGACTGGAGGCTCTTCAGGGCTTTGATGGAGTAAATTATGCTCTCAGTCTGCTCTGCCTGAGCCAGTCTGTCATGCTGGGTTTCGACAACAGAGTGTCTCTTCTGGCCTGGGATGCTCGGATCCGCTACAGCCTTGGAGAGGTTCACAGGTTCAACGTCAACATCCAGCCTGGCACCAAACTAGAAAGTGGCCCGGCCTCTTTGCATTTGTGCAACAACCTGCTTGTCGTTGCCAGAGACCTCCCTCCAACCGTCATCGGCCAATGGAAGCTGTCGGATCTAAGACGTTACGGTGCCTTTCCTAATGGATTTGTCTTTGAGGGCGGGACAAGATGCGGCTACTGGGCCGGGGTTTTCTTTCTTGCGTGTGCAGATGGAGAACAGATCAGTTTTTTGGTGGATTGCATCGTTCGTGGCATTTCGCCAAGCAGAGGGCCGTTTGGACTGCGGCCAGTCCTGCCAGACCCCAATGCTAACCCGTCGTCTATAGAAGACCGGATTAGCCAGGAGGCTAGTGAGCTGGAGAAAAGACTCAGCATGCTGTCCATTTGTAGTCACCACAGCAGTGCAGCCTCCACCTTCAGTTATGGCGCCTCTTTGGCAGGAGATGATCGAAGTATCTCCAGCTCGTCCTCTGAGGCCAGCCATTCTGATAACAGCTTGGGCAGCCGCCTGGCGATCTGGCCGGAGCCAGTCAGACACCCCACCCCTGTCGAACCACCACcgccaccaccatcatcatcatcatcatctcattTATTGGTTACAGGATGTAAAAGCACAGCCTGTTCAGTCAGTACGTCCAGTGACGAGCGCATATATGGAGTTATGATGGGTGGACTTCGCCCCCCGTCCAAACCCCCTCACCCTAGGGGCCTTCAGGAGGCGGGACGGCAGAGCTCCACAGACAGCGGCATCGCCACCGGAAGCCACTCCTCATATTCGGGAAGCTTCTCCTCTTACACTGGGAGCATGGATATTGGCCATGGAGAGACTGACGAGTTTGGATCCTTAATAAGCCTTCCTCAAAACCCCAATTCAGTCTCTATTATAAACACTCCAGTAAGGACAGTTCCCCAGATTCCTGAGGACAACCCATGTGTGTGTTCTCTCCGAGAGGCTGATCAAACACAGGCCAACGTATACACAAGTTCACCTCTGCAGCATTACGATGTCCCTCGCAGGTTCCTACAACACAATCAGGAGCAGTGTTCCACTGGTGTGGTTCAGGACAGAGGGTCTGAATGTGGAGCGGAGAGTGTCCCTGCTGACAACGTCATAAGACAGACTGTCCTGAGGAGATTGAACTCTTGTGGAGTAGACGCAGTGCCACCTGAAGGTCCCACCACAACACGCTTACAACCCATCATCTGTCCTGACTGTGGCGGACGAAAGGTGGAAGAGAAAAGCCGTTCTGAGCAGCAGAAGACTGATGCAGATCCAAAAGGCAATTATGAACAGATGGCATTGATGAGTGATTTGTCCAGGTGGACACAGTTCAGAGCCGGAGAGTATGGTAATTCACATGCCCTCATTTCATATATCTCTCCATCGGATCATAGCATTTCGTTACTATCTGTGTATGAATCTGGTTTCTGCTGTGGTCTTACAGGAGAGGCCGGACTGACAGTCACTGACAGAGCTCAAGGTGATTCTGTAAATTATGTTAACATCCCCATCAGTCCTACATCTAAACGACAGCTGCACTATATGGAGCTGGATCTGCAGGACCGTCCTGAATCAAGCCACACTATCAGAGCGGCTGGCTCCAGCACTAAATATGCCCACATTGACATCACTGCGACAGAGACGGCACAGAGGGTTGGTGCCCAGCATGCACAGGGCAGAGAGGATAGACTGCTGGAACTAGAGCACAAGAGGAGAGGAacactcacataaacacacaaagtattttaatatgaTGAGGATTTTTCTCTCCATTCAAGCCcagaaatatttgtattttttactgtAGAGATTTAAGGGGGGAGATGATTCTTTTAATTTCTtcttttgacatttggattttaataataaataaactttaaaaagatAAAAGCATAGATCTAGTATAGAATATTTAACCTGCAGCCATGTACCTGGAAATGTGGCAccacttttcatttttttacatttaaaaatattcttgatgtcttttttttaaattctgtcaaAATTGTTTgcagattaaatttttttctctCAAACTTCCATGAAACACATCATCagcttttaaacacattttcaaaccCTGATCTacagaaaacagttattttataagaAATTCATTCTTCAGGcattttttcttaaatgtttttactCATTGTGATGCTAAAATATGTAAGTTAAATGCAAAATATAATCGCTTTTATAAGTGATCTCTTTATggttcactatatatatatatatatatatatttatcagtgGTTCTAAATATTATTTACCTTATAAAGTAATCATCCTACACAACCAAAATGGAAAGTGAAATGCAGCCTTCCaaaaataagatgtttttatttatttatataaaattaatcaaTTTGCAGATGTGACTGacagtgtaatgtaatgtaatgtgtatttatatagcacattcatCGTGTATCATCCAC

Function

GO:

id name namespace
GO:0048741 skeletal muscle fiber development biological_process
GO:0007528 neuromuscular junction development biological_process
GO:0007416 synapse assembly biological_process
GO:0061098 positive regulation of protein tyrosine kinase activity biological_process
GO:0001966 thigmotaxis biological_process
GO:0019901 protein kinase binding molecular_function

KEGG:

id description
ko04990 Domain-containing proteins not elsewhere classified

ZFIN:

id description
ZDB-GENE-090312-103 Predicted to enable protein kinase binding activity. Acts upstream of or within skeletal muscle fiber development; synapse organization; and thigmotaxis. Is expressed in post-vent region and tail bud. Human ortholog(s) of this gene implicated in congenital myasthenic syndrome 10 and fetal akinesia deformation sequence syndrome 3. Orthologous to human DOK7 (docking protein 7).

Ensembl:

ensembl_id ENSDART00000135369

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00002969 lncRNA downstream 478176 40649944 ~ 40664705 (-) True XLOC_001394
TCONS_00003454 lncRNA downstream 483866 40648878 ~ 40659015 (-) False XLOC_001394
TCONS_00003453 lncRNA downstream 494736 40647644 ~ 40648145 (-) True XLOC_001393
TCONS_00003452 lncRNA downstream 804479 40333894 ~ 40338402 (-) True XLOC_001390
TCONS_00003451 lncRNA downstream 834256 40268545 ~ 40308625 (-) True XLOC_001389
TCONS_00003455 lncRNA upstream 30872 41223078 ~ 41260278 (-) False XLOC_001400
TCONS_00003456 lncRNA upstream 299095 41491301 ~ 41493481 (-) True XLOC_001403
TCONS_00003457 lncRNA upstream 340458 41532664 ~ 41533488 (-) True XLOC_001404
TCONS_00003458 lncRNA upstream 395949 41588155 ~ 41591134 (-) True XLOC_001405
TCONS_00002970 lncRNA upstream 407012 41599218 ~ 41608702 (-) True XLOC_001406
TCONS_00002299 mRNA downstream 148622 40992682 ~ 40994259 (-) True XLOC_001398
TCONS_00002298 mRNA downstream 228129 40912613 ~ 40914752 (-) True XLOC_001397
TCONS_00002297 mRNA downstream 231549 40909750 ~ 40911332 (-) True XLOC_001396
TCONS_00002296 mRNA downstream 407500 40733921 ~ 40735381 (-) True XLOC_001395
TCONS_00002295 mRNA downstream 534489 40572757 ~ 40608392 (-) True XLOC_001392
TCONS_00002302 mRNA upstream 9380 41201586 ~ 41287914 (-) False XLOC_001400
TCONS_00002304 mRNA upstream 22447 41214653 ~ 41287914 (-) False XLOC_001400
TCONS_00002303 mRNA upstream 22447 41214653 ~ 41287914 (-) False XLOC_001400
TCONS_00002307 mRNA upstream 101758 41293964 ~ 41374117 (-) True XLOC_001401
TCONS_00002310 mRNA upstream 578636 41770842 ~ 41817784 (-) False XLOC_001409
TCONS_00002278 other downstream 1156721 39985905 ~ 39986160 (-) True XLOC_001380
TCONS_00002277 other downstream 1159828 39982172 ~ 39983053 (-) True XLOC_001379
TCONS_00002266 other downstream 1464961 39675706 ~ 39677920 (-) True XLOC_001374
TCONS_00002265 other downstream 1768970 39373802 ~ 39373911 (-) True XLOC_001373
TCONS_00002260 other downstream 2329463 38808689 ~ 38813418 (-) False XLOC_001371
TCONS_00002305 other upstream 30872 41223078 ~ 41239584 (-) False XLOC_001400
TCONS_00002306 other upstream 38609 41230815 ~ 41260278 (-) True XLOC_001400
TCONS_00002308 other upstream 119571 41311777 ~ 41311892 (-) True XLOC_001402
TCONS_00002309 other upstream 408829 41601035 ~ 41601152 (-) True XLOC_001407
TCONS_00002314 other upstream 1085317 42277523 ~ 42277650 (-) True XLOC_001412

Expression Profile

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