RNA id: TCONS_00002303


Basic Information

Item Value
RNA id TCONS_00002303
length 5413
RNA type mRNA
GC content 0.48
exon number 15
gene id XLOC_001400
representative False

Chromosome Information

Item Value
chromosome id NC_007112.7
NCBI id CM002885.2
chromosome length 59578282
location 41201586 ~ 41287914 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

TCCAAAacctttcttccttttttcttgtAAAGGTGTACTGTGAATATTCAAGCATTCACCATGTTAGTTCCTTAGGCTGGAGCTCTGGAACTGAAAGGATGATATCATTAAGCTCTCCATCTCTGTATTTGTGAAGCCTGTTTCAAAAAAGAGCTAAACAGAGAGCCAAAGAAGGATGTTCAGGCAATCAGAACAAGGCAGGAGGCGTGTAAATGCCCAGCCATCTGCTCGCATTAGAGGAGTGGAGGTTGCAAGGGGGAGAACAGGCTATGGCTTCACACTCTCTGGTCAGTCTCCATGTGTTCTGAATTGCATCCTTAAGGGTAGTCCAGCTGATTATGTGGGCCTTCGCTCTGGAGATCAGATCCTGAGTGTGAATGACATTAATGTGTCCAAAGCTTCTCATGAGGATGTTGTTAAGCTGATTGGCCGCTGCACAGGTGTCCTACACTTAGTCATTGCCGAAGGCAGTCATAAAAACGGCCACGTTGATTCGTGTTCAAGTGATGAAGAACTGGAGTTCCATGACCACAAGAGCCACTGGCTGAGGCCAAAGATGGACTCAAAGACACTAGGCATAAACCGTGCAGAACGTGTTGTAGCAGAGATGCAGTCTGGTGGGATCTTCAACATGATCTTTGAAAATTCGAGCCACTCATCCAGCAGCTCAGAAAGAGCAGTTGCTTGTGCCTCTGCTTCCAAACCAAGGGCTGTCTCAGAGCCAGAATTCCCTTATGTGAGCGTCAACACCCAAAAAAGTGATCCCAACTTGCTCACTGAGGAAGAGATGGCCAAAGTGCTCAATGACGACTCTGTGTTTGTTGATATGTTTGAACCGCAAGATGAATTTGCCCTGTTGCAAACTGCAGACTCTGCAGGAATACTCAATGTTGGGATGATTGTGGGTTACTTGGGATCTATTGAATTAGCTTCAACAAGTGCCAATTTAGAAAGTGACAGCCTGCAGGCAATACGTGGCTGTATGCGACGTCTACGTGCCGAACAAAAAGTGCACTCGTTGGTTTTGCTTAAAGTCATGCATGATTGTGTGCAACTATGCAATGACCGAGGTGCTGTTCTAGCAACTTACCCTGCAGAGAAGTTAGCCTTCAGTGCTGTGTGTCCAGACGACCGCCGCTTTTTTGGCCTTGTCACCATGCAAGCAACAAATGACCACCGCATGTATAGGCATGGTGAGGAGGAGCAAGGCTTACGGACATCTTGTCATGTCTTCATTGTAGACCCGGAACTCTGTCATCATAAAATCCACCAGGGTATTGCCCGACGCTTTGGCTTTGACTGCACTCCAGACCCAGATACTGGTGGCTGCTTGGAGTTCCCACCGACTTCTCAGCCACTTCTACAGTTTGTGTCTGTTCTGTATCGTGACATGGGAGAATCCATAGAGGGTATGCGAGCTCGAGCTTTCCTTGATGGTGACTTAGATGCTCAGCAGAACAACAGCACAAGCAGCAACAGTGACAGCGGCATTGGGAACTTCTTGCCAGAGGAAAAGAACAACCGAGTCCTCTTGGTGGACTTGGGTGCAAATCCTAGTCGACATGTTCCTACAGGACCTTGGGAAAACCCTATGGGATCTTTTTGCCAGGGTGCCATAGGAGGTCTTCCGCCACCACCTCCTCCGCCACCGATCTCACATCGTAACGGATTTCGGCATGAGCAGTTTGTGGATCACCCTCAGCCCCATCCACATTCCCATGGAGACCCACCTCTGCTTTCTGGCAGGCATCTAAACTCCTCCTCACGGCTGGATGTGTCAGGCCTTCCTTCGCGCTCACACTATTCTGCTCATGGCAAGAAAGCGGCAGGGGCATCAGGCCAGCGCTGGCTGCCAGTTCACGTCCTGAGGGATTGGCGTCAGGGACACAGCAGTGATCAGGAGTCTTATGCAGAGTCCACAGACGGATGGTCCAGTGCTAACTGTAGCACCCTGCCACCACCGATGAGCAAGATTCCAGCTGACCGGTACCGTGCTGCAGGCGAAATCGCCTCACAGCCTCACCGGCTTCATGCACAGAAGGATGAGTGGGCTAAGAAGCTGTTTGGGGAGAAGAACCTACGAGAGCATTCACAACAATCGAACAATGTCAGAAGAGCTAAAGATTCAGAAAAAAAGGGTGGAAGGTTCAAAGGGATCACTATGGGCTTTCCTCAGCGTTCCTCTGGCCGACGATCTTTTGGACGTTCCAAGCGTCTTAGCATGGCTCGCTCACTTGATGACCTTGAGTCTGCAGCTGTCTCTGATGGTGAGCTTAACAGTGTGGACCTGAAAGGCTGCGGCAGTGATAACAGTCTGAACAGCAATGCCAGCCTACCTAGCGTGCAATGCCATAGACGGCACACTGAACGGCGCGTTGCATCGTGGGCCGTCTGCTTTGAGCGCCTGCTACAGGATCCCGTCGGTGTCCGATATTTCTCGGAGTTTCTAAAGAAGGAGTTTAGCGAagagaatattttattttggcaagctTGTGAATATTTCAGCCATGTACCTGAAACAGACAAGAAACAGCTGTCCCAGCGGGCCAGAGAGATCTACAACAGCTTCCTGTCTAGTAAAGCTACCACACCCGTCAACATTGATAGTCAAGCTCAGCTGGCTGACGACATCCTCAACGCACCGAGGCCAGACATGTTTAAAGAGCAACAGCTTCAGATCTTCAACCTGATGAAGTTTGACAGTTACACACGCTTCCTAAAGTCTTACCTGTATCAGGAATGTATGCTTGCAGAGGTGGAGGGCCGTCCACTTCCAGACCCCTACCAGGTGCCCAGTAGCCCCACATCCAAACATAGCACAGGTTCCGACCGCTCCAACCTCTCTACACCTAaaaaggtgcAGGACGACAAGAAGAGCAAATCGGGAAGGTCACTGAATGAAGACAGCAGAGATGAACATggcgataaaaaaaaaagtattttcttctCTTGGTCCAGAAATAGAAGTTTTGGAAAAGGGTCGAAAAAAAGAGACCTCGCAGATTACAGCTTTACAGGTAGTAACGGAAGGAGAGAATCACAAGGCTCTTTGTCGTCTGGTGCGAGTTTGGAACTTGCCACTTCCGGTTCTGGAAAAAATGAGGGTGAGGTGTCGCGTAACTCCATGTCGTTGTCTGAGCGTGCCGTGCGTCACTGTAACATTAACCTACCGGATGGCTCATGCTGCTCAGTACCCATCAGGCCCGGCGTCTCCATCAGAGAGGTGCTCTTAGGCTTGTGTGAGAAACTAGGCATTAATCTGGCTGCTGTGGACCTGTTCCTAGTAGGAGGAGAAAAGCCTTTAGTGTTGGACCAGGACTGCATGACACTGTGCTCCAGGGATCTGCGGCTGGAGAAACGTACGCTATTCCGACTGGATCTGGTGCCTATAAATCGTTCTGTTGGACTGAAAGCAAAACCCACTAAGCCGGTTACAGAAGTGCTGAGACCAGTGGTGGCTAAATATGGTTTAAACTTAGGAGACCTGGTGGCCACGATAAGTGGAGAGAAAGAGCCGCTGGATCTTGGGCTTCCTATATCTAATCTAGATGGCCTGAGGGTGGTTCTTGAAGCAGGTGACCACGTTTCTGGGAAAGATAAACAAAAGCTGGTCTCATCGAAAAGTCACGGTCCACCTCTGTCTACACGAAGCCAATCTGCCACAAATTCTTCGAGCTCATATCCAAAGCACAGAGCAACAGAGCTGACGACCAGCGGGGTTTGCTGAACAAATCAGACCTTGTCCTGCCCGACTTCCTGCGCCTCGACACGGAAGCAGACGGCAACAACCTCAGCTCCACACCCATCTCCCACAAGACTCGACCACGATCCAAGGAGAATGGCTCTGCCCTCAGTGCCAGTCACCAAACGCAGAGCTTAGATTCAGCGGGGGAGGGCAAAGCACCCAGACGAGCACTAATGCCACCCAACAGTGCCCTCAGAAACACATCCAGCCGAATTCCGCCACCGTTCAGTTCCTCGCTCTCCCCAATCCCACATTCGCAAAtggggggctcgtccgggatcacAGACTGGAGGAGTGACGGAGGGGTCCAGGCACTGGAGGAAGAGGAGAGCGGCATGGACCTGACTTTTGTTGCCGAAGGCGACATCACAAGCCCTAACAGCTCTCTCCTTCACCAGTCCCCCATTCCTCTCCCTCCTTCCCCAGAGCGATCACACCTCCTGAAGGAGGACACTTGCCAGGACAGCTGGGCTCGATCAGGTACCTCTCCTGTGTGAAGCAACTACGCTTGCATGTGATATCCTCATCTCTCTCTGGTCCCTCCTGAAGATGTGTGATTTCTGAGTGCTGTGGAATTGCTGTGGTCCTCGTTGTAAGCCCTCTGCCAAACTCTGGCAAAAGCAGCTCCTTCTCATGTACATTTGACACCCTTTAAGCACTTTAACGAAGAATCGAAAAAGAGACTTCTGTACCTACAATGCATATGATGGGTTATTTTTTTCCCTGAAAGTATTTTAAAACTAGCCACACAGAATCTTGACAATCATTAACTTCCATCGCTTTTATCCTCTGAGAGAAACAATAGAATTATTGTAGCAGTTTGACTGATTTGAGGTCAGTAACGAACTGAAGAGAACTTACTGGTTTTCTGCATATCTCTACCCTCTGGCTGATCACATGACGGCCTTAACAGGAGCCACAACTGACTGAACTAAACATGTGATAAATCTTCTTAGACACTAAATATAAACTACATACCAGACATGGAGTGTTTGAGGTGACAAGCACAGCCATTTACGCATGAATATATTAATCTGCTCAAATGACGTGGATACACACATGGATtaaaacatacacacaagcacaatcCGTTTTAGTACGACAGAGGCCTCGTCTTACCTCTCTTTGGTGACCAGTAGTGTGCCTTCCATCAACCTGTCCATCAAACCTAAATACTGACAAAGAGTCTTCGGTAACTCCTCATGACCTCACATTTCTGTATCTTAAACCGAGACCTCAAAgatcacttttgttttctttatccGATCGTAATCTTACGAAAATGCAATTCAACAATGTTTAGCCTCTCAGATCATTTCCTGTTTATCGCCATGACATCACTTCCAATTGTTTTGGAGCTACATTTCACATATGTGTTCGAGTAATATAATCCTATGAAAGGATTAACTTATCCCTGATGAAACTTCAGTGTATCTTCCTCAATGGCAAAATACTACATGTGTACATAGCTTCTGTTACAGTTGAGTTGAGCTGCCAGCGTTGTTGAATTGCCCTCCATTCTGTTCATTCTGACACTGAAATCATGATCAGTTTTCTGTAGCAGTCTTTTTTTAGACGACCGTTATCTTTGCTCCAACTGATGTTTCTCCAGACATGTAAATAgagttaaataaatgttacaggGGAGATCTCTCTCCCTTCCTATCA

Function

GO:

id name namespace
GO:0007165 signal transduction biological_process
GO:0030695 GTPase regulator activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-031006-13 Predicted to enable GTPase activator activity. Predicted to act upstream of or within signal transduction. Predicted to be located in cytoplasm and dendrite. Is expressed in retina and ventricular zone. Orthologous to human RGS12 (regulator of G protein signaling 12).

Ensembl:

ensembl_id ENSDART00000125988

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00002969 lncRNA downstream 549948 40649944 ~ 40664705 (-) True XLOC_001394
TCONS_00003454 lncRNA downstream 555638 40648878 ~ 40659015 (-) False XLOC_001394
TCONS_00003453 lncRNA downstream 566508 40647644 ~ 40648145 (-) True XLOC_001393
TCONS_00003452 lncRNA downstream 876251 40333894 ~ 40338402 (-) True XLOC_001390
TCONS_00003451 lncRNA downstream 906028 40268545 ~ 40308625 (-) True XLOC_001389
TCONS_00003456 lncRNA upstream 203387 41491301 ~ 41493481 (-) True XLOC_001403
TCONS_00003457 lncRNA upstream 244750 41532664 ~ 41533488 (-) True XLOC_001404
TCONS_00003458 lncRNA upstream 300241 41588155 ~ 41591134 (-) True XLOC_001405
TCONS_00002970 lncRNA upstream 311304 41599218 ~ 41608702 (-) True XLOC_001406
TCONS_00003459 lncRNA upstream 469142 41757056 ~ 41761162 (-) True XLOC_001408
TCONS_00002300 mRNA downstream 22447 41142881 ~ 41192206 (-) False XLOC_001399
TCONS_00002301 mRNA downstream 22594 41155671 ~ 41192059 (-) True XLOC_001399
TCONS_00002299 mRNA downstream 220394 40992682 ~ 40994259 (-) True XLOC_001398
TCONS_00002298 mRNA downstream 299901 40912613 ~ 40914752 (-) True XLOC_001397
TCONS_00002297 mRNA downstream 303321 40909750 ~ 40911332 (-) True XLOC_001396
TCONS_00002307 mRNA upstream 6050 41293964 ~ 41374117 (-) True XLOC_001401
TCONS_00002310 mRNA upstream 482928 41770842 ~ 41817784 (-) False XLOC_001409
TCONS_00002311 mRNA upstream 495451 41783365 ~ 41817742 (-) False XLOC_001409
TCONS_00002313 mRNA upstream 669296 41957210 ~ 41982582 (-) True XLOC_001411
TCONS_00002315 mRNA upstream 993394 42281308 ~ 42289704 (-) False XLOC_001413
TCONS_00002278 other downstream 1228493 39985905 ~ 39986160 (-) True XLOC_001380
TCONS_00002277 other downstream 1231600 39982172 ~ 39983053 (-) True XLOC_001379
TCONS_00002266 other downstream 1536733 39675706 ~ 39677920 (-) True XLOC_001374
TCONS_00002265 other downstream 1840742 39373802 ~ 39373911 (-) True XLOC_001373
TCONS_00002260 other downstream 2401235 38808689 ~ 38813418 (-) False XLOC_001371
TCONS_00002308 other upstream 23863 41311777 ~ 41311892 (-) True XLOC_001402
TCONS_00002309 other upstream 313121 41601035 ~ 41601152 (-) True XLOC_001407
TCONS_00002314 other upstream 989609 42277523 ~ 42277650 (-) True XLOC_001412
TCONS_00002319 other upstream 1686846 42974760 ~ 42974875 (-) True XLOC_001415
TCONS_00002327 other upstream 2432035 43719949 ~ 43725218 (-) False XLOC_001419

Expression Profile

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