Gene
RNA
| Item | Value |
|---|---|
| RNA id | TCONS_00002313 |
| length | 5643 |
| RNA type | mRNA |
| GC content | 0.38 |
| exon number | 2 |
| gene id | XLOC_001411 |
| representative | True |
| Item | Value |
|---|---|
| chromosome id | NC_007112.7 |
| NCBI id | CM002885.2 |
| chromosome length | 59578282 |
| location | 41957210 ~ 41982582 (-) |
| genome version | GRCz11_2017_zebrafish_Genome |
| species | zebrafish (Danio rerio) |
| id | name | namespace |
|---|---|---|
| GO:0007186 | G protein-coupled receptor signaling pathway | biological_process |
| GO:0007200 | phospholipase C-activating G protein-coupled receptor signaling pathway | biological_process |
| GO:0001996 | positive regulation of heart rate by epinephrine-norepinephrine | biological_process |
| GO:0007204 | positive regulation of cytosolic calcium ion concentration | biological_process |
| GO:0071880 | adenylate cyclase-activating adrenergic receptor signaling pathway | biological_process |
| GO:0007267 | cell-cell signaling | biological_process |
| GO:0043410 | positive regulation of MAPK cascade | biological_process |
| GO:0045907 | positive regulation of vasoconstriction | biological_process |
| GO:0007165 | signal transduction | biological_process |
| GO:0005886 | plasma membrane | cellular_component |
| GO:0005887 | integral component of plasma membrane | cellular_component |
| GO:0016020 | membrane | cellular_component |
| GO:0016021 | integral component of membrane | cellular_component |
| GO:0004930 | G protein-coupled receptor activity | molecular_function |
| GO:0004935 | adrenergic receptor activity | molecular_function |
| GO:0004937 | alpha1-adrenergic receptor activity | molecular_function |
| id | description |
|---|---|
| ko04020 | Calcium signaling pathway |
| ko04022 | cGMP-PKG signaling pathway |
| ko04080 | Neuroactive ligand-receptor interaction |
| ko04261 | Adrenergic signaling in cardiomyocytes |
| ko04270 | Vascular smooth muscle contraction |
| ko04970 | Salivary secretion |
| ko04030 | G protein-coupled receptors |
| id | description |
|---|---|
| ZDB-GENE-090312-203 | Predicted to enable alpha1-adrenergic receptor activity. Predicted to be involved in several processes, including G protein-coupled receptor signaling pathway; positive regulation of MAPK cascade; and regulation of blood circulation. Predicted to act upstream of or within G protein-coupled receptor signaling pathway. Predicted to be located in plasma membrane. Predicted to be integral component of membrane. Predicted to be integral component of plasma membrane. Orthologous to human ADRA1D (adrenoceptor alpha 1D). |
| ensembl_id | ENSDART00000014678 |
| RNA id | RNA type | direction | distance | location | representative | gene id |
|---|---|---|---|---|---|---|
| TCONS_00003460 | lncRNA | downstream | 80433 | 41874937 ~ 41876777 (-) | True | XLOC_001410 |
| TCONS_00002312 | lncRNA | downstream | 139429 | 41793301 ~ 41817781 (-) | True | XLOC_001409 |
| TCONS_00003459 | lncRNA | downstream | 196048 | 41757056 ~ 41761162 (-) | True | XLOC_001408 |
| TCONS_00002970 | lncRNA | downstream | 348508 | 41599218 ~ 41608702 (-) | True | XLOC_001406 |
| TCONS_00003458 | lncRNA | downstream | 366076 | 41588155 ~ 41591134 (-) | True | XLOC_001405 |
| TCONS_00003461 | lncRNA | upstream | 303939 | 42286521 ~ 42289861 (-) | False | XLOC_001413 |
| TCONS_00002316 | lncRNA | upstream | 305654 | 42288236 ~ 42289744 (-) | True | XLOC_001413 |
| TCONS_00002971 | lncRNA | upstream | 1148308 | 43130890 ~ 43155453 (-) | True | XLOC_001416 |
| TCONS_00003462 | lncRNA | upstream | 1535627 | 43518209 ~ 43540087 (-) | False | XLOC_001417 |
| TCONS_00003463 | lncRNA | upstream | 1535627 | 43518209 ~ 43617169 (-) | False | XLOC_001417 |
| TCONS_00002310 | mRNA | downstream | 139426 | 41770842 ~ 41817784 (-) | False | XLOC_001409 |
| TCONS_00002311 | mRNA | downstream | 139468 | 41783365 ~ 41817742 (-) | False | XLOC_001409 |
| TCONS_00002307 | mRNA | downstream | 583093 | 41293964 ~ 41374117 (-) | True | XLOC_001401 |
| TCONS_00002302 | mRNA | downstream | 669296 | 41201586 ~ 41287914 (-) | False | XLOC_001400 |
| TCONS_00002304 | mRNA | downstream | 669296 | 41214653 ~ 41287914 (-) | False | XLOC_001400 |
| TCONS_00002315 | mRNA | upstream | 298726 | 42281308 ~ 42289704 (-) | False | XLOC_001413 |
| TCONS_00002317 | mRNA | upstream | 793971 | 42776553 ~ 42779075 (-) | False | XLOC_001414 |
| TCONS_00002318 | mRNA | upstream | 794360 | 42776942 ~ 42778510 (-) | True | XLOC_001414 |
| TCONS_00002320 | mRNA | upstream | 1669898 | 43652480 ~ 43684584 (-) | False | XLOC_001418 |
| TCONS_00002322 | mRNA | upstream | 1712451 | 43695033 ~ 43712120 (-) | False | XLOC_001419 |
| TCONS_00002309 | other | downstream | 356058 | 41601035 ~ 41601152 (-) | True | XLOC_001407 |
| TCONS_00002308 | other | downstream | 645318 | 41311777 ~ 41311892 (-) | True | XLOC_001402 |
| TCONS_00002306 | other | downstream | 696932 | 41230815 ~ 41260278 (-) | True | XLOC_001400 |
| TCONS_00002305 | other | downstream | 717626 | 41223078 ~ 41239584 (-) | False | XLOC_001400 |
| TCONS_00002278 | other | downstream | 1971050 | 39985905 ~ 39986160 (-) | True | XLOC_001380 |
| TCONS_00002314 | other | upstream | 294941 | 42277523 ~ 42277650 (-) | True | XLOC_001412 |
| TCONS_00002319 | other | upstream | 992178 | 42974760 ~ 42974875 (-) | True | XLOC_001415 |
| TCONS_00002327 | other | upstream | 1737367 | 43719949 ~ 43725218 (-) | False | XLOC_001419 |
| TCONS_00002392 | other | upstream | 3333627 | 45316209 ~ 45317628 (-) | True | XLOC_001459 |
| TCONS_00002410 | other | upstream | 3672493 | 45655075 ~ 45662751 (-) | True | XLOC_001465 |
| species | RNA id | representative | length | rna type | GC content | exon number | chromosome id | location |
|---|---|---|---|---|---|---|---|---|
| grasscarp (Ctenopharyngodon idella) | CI01000049_09421372_09430717.mRNA | True | 2524 | mRNA | 0.43 | 2 | CI01000049 | 9421219 ~ 9431606 (+) |
