RNA id: TCONS_00002320


Basic Information

Item Value
RNA id TCONS_00002320
length 1378
RNA type mRNA
GC content 0.50
exon number 9
gene id XLOC_001418
representative False

Chromosome Information

Item Value
chromosome id NC_007112.7
NCBI id CM002885.2
chromosome length 59578282
location 43652480 ~ 43684584 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

CTGGACTACTAAGTGCGCTGACGTTTAGGTCCATGTCTGTCCGGTGTCATTGGTGAATGACCGAAGATGTCTCACAGCAGGTTGTTTGCCCGCTTGCTCTTGCAGCAAGCAGGAGTGAGACACTGTTATTCTGGATCCAGGAACAACCTTTACATTAACAAGAACACTAAGGTCATCTGTCAAGGGTTCACCGGAAAACAGGGCACATTTCACAGTCAGCAGTCTCTGGACTATGGCTCTCAGTTAGTAGGAGGAGTGTCTCCAGGCAAGGGGGGCAAAACACACCTGGGTCTGCCAGTCTTCAACTCCGTGAAGGAGGCAAAAGATGGCACAGGCGCTGAAGCCACCGTGATCTACGTGCCACCTCCTTTCGCAGCAGCTGCCATCATAGAAGCGATTGACGCAGAGATGCCGCTGGCTGTCTGCATCACAGAAGGAATCCCTCAGCAGGACATGGTGCGAGTCAAACACAGGCTGCTCCGCCAGAACAAAACCCGCCTCGTCGGCCCCAACTGTCCTGGTGTCATCAATCCTGGCGAGTGCAAAATCGGGATCATGCCTGGACACATCCACAAGAAAGGAAGAATTGGCATTGTATCCAGATCAGGCACCCTTACGTATGAAGCTGTACATCAGACGACACAAGTGGGTCTTGGCCAGTCACTGTGCATTGGAATCGGTGGAGATCCTTTTAATGGGACAAACTTCATTGACTGCCTGGAGGTTTTCCTGCAGGACCCAAAAACAGAGGGCATCATTCTGATTGGAGAGATCGGAGGAGATGCTGAAGAGAATGCGGCAGAGTACCTGAAACAGCATAACTCAGGTGCCAATGCTAAGCCGGTGGTGTCGTTCATTGCTGGCTTGACGGCTCCTCCTGGAAGGAGAATGGGCCATGCAGGAGCCATCATTGCCGGAGGGAAAGGGGGAGCCAAAGAGAAGATTGCGGCTCTGCAGTCAGCTGGCGTTGTCGTCAGCATGTCTCCGGCTCAGCTGGGCAGCACTATATTCAAGGAGTTTGAGAAGAGGAAGATGTTGTAACACGTTAGAGGGAGTGTAAGAACCAGACTGCCCTCCCTGCCTTAGGACTTCATCCCTGCTGGAGCCCACCACCGTCGTCCAGGCTCAACAGTGCgcacatttttgtgtttttaactcATTCTCTGAGTATATGTTCTGTGTTTGCACcagaggaaataaaaaaaaaaacatttcaaagtctATCACAGGTTTCGTCTTAGAAGTGCACACAACACAAGAACAAATTCACCTTGTAATCCAGCCACACTCGAAGCAATGTCAGCCATGTGTTGCTATATGTCATAATGTTTTCTCTCCTTCTGAAACGGAAAATATATATCTCTCTCTTCTGCTCTAA

Function

GO:

id name namespace
GO:0006099 tricarboxylic acid cycle biological_process
GO:0009361 succinate-CoA ligase complex (ADP-forming) cellular_component
GO:0005739 mitochondrion cellular_component
GO:0004775 succinate-CoA ligase (ADP-forming) activity molecular_function
GO:0004776 succinate-CoA ligase (GDP-forming) activity molecular_function
GO:0000166 nucleotide binding molecular_function
GO:0016874 ligase activity molecular_function
GO:0003824 catalytic activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-040912-101 Predicted to enable succinate-CoA ligase (ADP-forming) activity and succinate-CoA ligase (GDP-forming) activity. Predicted to be involved in tricarboxylic acid cycle. Predicted to be part of succinate-CoA ligase complex (ADP-forming). Predicted to be active in mitochondrion. Is expressed in several structures, including adaxial cell; alar plate midbrain region; digestive system; musculature system; and solid lens vesicle. Human ortholog(s) of this gene implicated in mitochondrial DNA depletion syndrome 9. Orthologous to human SUCLG1 (succinate-CoA ligase GDP/ADP-forming subunit alpha).

Ensembl:

ensembl_id ENSDART00000074609

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00003463 lncRNA downstream 35311 43518209 ~ 43617169 (-) False XLOC_001417
TCONS_00002972 lncRNA downstream 37342 43518355 ~ 43615138 (-) True XLOC_001417
TCONS_00003462 lncRNA downstream 112393 43518209 ~ 43540087 (-) False XLOC_001417
TCONS_00002971 lncRNA downstream 497027 43130890 ~ 43155453 (-) True XLOC_001416
TCONS_00003461 lncRNA downstream 1362619 42286521 ~ 42289861 (-) False XLOC_001413
TCONS_00002326 lncRNA upstream 29716 43714300 ~ 43722317 (-) False XLOC_001419
TCONS_00003464 lncRNA upstream 29716 43714300 ~ 43725218 (-) False XLOC_001419
TCONS_00002329 lncRNA upstream 37333 43721917 ~ 43727025 (-) True XLOC_001419
TCONS_00002337 lncRNA upstream 217829 43902413 ~ 43904199 (-) False XLOC_001422
TCONS_00002336 lncRNA upstream 217829 43902413 ~ 43904279 (-) True XLOC_001422
TCONS_00002317 mRNA downstream 873405 42776553 ~ 42779075 (-) False XLOC_001414
TCONS_00002318 mRNA downstream 873970 42776942 ~ 42778510 (-) True XLOC_001414
TCONS_00002315 mRNA downstream 1362776 42281308 ~ 42289704 (-) False XLOC_001413
TCONS_00002313 mRNA downstream 1669898 41957210 ~ 41982582 (-) True XLOC_001411
TCONS_00002310 mRNA downstream 1834696 41770842 ~ 41817784 (-) False XLOC_001409
TCONS_00002322 mRNA upstream 10449 43695033 ~ 43712120 (-) False XLOC_001419
TCONS_00002323 mRNA upstream 27175 43711759 ~ 43727613 (-) False XLOC_001419
TCONS_00002324 mRNA upstream 29565 43714149 ~ 43727555 (-) False XLOC_001419
TCONS_00002325 mRNA upstream 29635 43714219 ~ 43727576 (-) False XLOC_001419
TCONS_00002328 mRNA upstream 35502 43720086 ~ 43727418 (-) False XLOC_001419
TCONS_00002319 other downstream 677605 42974760 ~ 42974875 (-) True XLOC_001415
TCONS_00002314 other downstream 1374830 42277523 ~ 42277650 (-) True XLOC_001412
TCONS_00002309 other downstream 2051328 41601035 ~ 41601152 (-) True XLOC_001407
TCONS_00002308 other downstream 2340588 41311777 ~ 41311892 (-) True XLOC_001402
TCONS_00002306 other downstream 2392202 41230815 ~ 41260278 (-) True XLOC_001400
TCONS_00002327 other upstream 35365 43719949 ~ 43725218 (-) False XLOC_001419
TCONS_00002392 other upstream 1631625 45316209 ~ 45317628 (-) True XLOC_001459
TCONS_00002410 other upstream 1970491 45655075 ~ 45662751 (-) True XLOC_001465
TCONS_00002426 other upstream 2942905 46627489 ~ 46630704 (-) True XLOC_001475
TCONS_00002434 other upstream 3037795 46722379 ~ 46722518 (-) False XLOC_001480

Expression Profile

//

Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) TU239601 True 904 TUCP 0.48 4 CI01000049 8465293 ~ 8476265 (-)