RNA id: TCONS_00003461


Basic Information

Item Value
RNA id TCONS_00003461
length 3341
lncRNA type read_through
GC content 0.36
exon number 1
gene id XLOC_001413
representative False

Chromosome Information

Item Value
chromosome id NC_007112.7
NCBI id CM002885.2
chromosome length 59578282
location 42281308 ~ 42289861 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

ttttattaaattattattaatcggGTTTAAGTGAATTAGATGTGTTTTGAAccaatctaaattaattaattaaagtctaTTAGAAAAAATTATGTTAGCTTTGTGCGCATGCGCGTTATGTTCCGTTGCCTCGGCGCCAAAGCCCAAAGGAAGGTTTACAGAATCCAGTCAGATGGAAGCAAGACGCCAGAGCCGGATTTCTGTACATCCATTTGCACAGTAAGTCACATTTTATATTGTACCAGACTGTTTATTAAAGAAAACTTTGTGGGTAACATAAACGCATAAAATGGTCTCTCGTTCGGACTGTCTATTTTGGTCGTTTTTAAATTTGACAGCGACCAGCCTTCGAGCGCGCTCGCAAGTTAAGCTAACAGTTAACGTTACACACGGTTTGACAAATCTCGTTTTTATGTCGCAgaatatattaaatattctttTTAGCAAGAATGTAGTTATGTAGACttgatatataatgttttttaatgaagTAAATGGCTATTTTCAAGAGAATAAGCATTTTCTTTGATGTGACGACAGTGTCCGTGATCCGCCATTCCAAACGAAAAAAGCTTCGTTGCTAACGTTAGCTCAGTCCTTTGTGAATTTACCGTGGCTTTTACTGTGGTTAACATTAAGCATGCGTTTAGATAGTTGTGAACGGACAGTAACATACTGATTTTGTTATAGAACGATTTGGTCTAGCGTTAGGGCACTACTGACTGTCTTAGGAGGTTGTCGAATGTGTGCCCATACTGGCGTAACATTAACTTTTAACGTAAAGGGCGTCCATTTatagttctttatttttttacgtGAGATGCTGTAATTATGTCTTTGGGGTTATAATGCACTTAATAGGCTAACTTATATTCACAGCAAGTGTTTATCAGCCACCGATAAACGTCCAGCGCAGGGGTTAACTTAATGTGACTTTCCATATTCATAAAGTGCCTTTTACATCAacgataatgtaatttaattaaaataatatcctttaaataagctgaagcaatcatttagttgttcaaacgTAAAACACATGCAGACGAGTGCTAAAACTTCATATAAAATATTGTGGTtaaaataaattgacatttttaagacATGGCGTTGaagaatggaatttaatgcagtgctttgactggtctgagacccactttatatcgtatcaatcaggcagtgacgattatcttaatcatattaatcaCGTTCAGCAATTTGTTCAATAAGTAATTTATCTAAATGTATGTTGCCTAATATAATTAATCGGTAAACAATATGTTGATTAAGAAGTTGGTCATATTGTAACTTGTGCTGAATTTTGAACCTAAATGATAATCATGTGCTTCCTTTCATTTGAGGTACTGTACAACAAGTTTCCTTTGCTGAGTTCCTTGGTCaggggtttaaacacattttctgtCCAGTACTGCAGTTGGAATTTTCCATCAacatttttatggtaagtaactgCAAAACATTTATCACTACACATTACAGTAAACAGTTTCTTAACTGAATATGTTGCTCTGAAAAATCTAAATAGTCCCAAAAAaggaaatttactcactattcactCACCATGTTTccatggttccaaacctttgagtttcttttatctgttgaacacaagacaaaatattttaaagagtgttagaaaccagtaatcattgacattcatagtaggaaaaacatattatggaagtcaatggttaccggttttcatcatttttcaaattatcttatgttgtgtttatcagaacaaagaaactcaaacaggtttgtgacaagtaaagAATAAGTAAATGTTATTGTTGCTTCCCTAGTTTTCACAGTACTAGGGTGCAGTAAGAGCACAAACACAGAGTTCAACTTTGATTCAACTCCGTGATTCTCTCAAGAGAGCCGAAAAAAATGTCTGACCTGCCATAAAATGATTCGACTATCTGCCGACCAAGAGAGGTTATTCACCTTTTTTTCCTCCTGTACATTGCATCAACACAGCACAGCAAATATCAAAGttgaaatttaatttgattcaaagaAGAGTCGCATCAGAATTTGGctcaaaattgcacaatagaaatTCGGCCTTAAGCCTGGTTTGTACTTCTTCGttgagtgattggcgtgacctaCTGCGCATGCCCTGCGTGCAGCTGAGCACTTATACTTgtgcgcgctgtttgtgttgttctACAATAACACTTACAAAAGCAGTAGGTTTATATGTTCCCTCTGTATGGAGTTTCTTCGCttgggttttgttttttctgaacactaccttaatgaACAAGCggataaaactcgctcattctgaggcGGTAGCTGGCGgtcatgcaacaactttaatcataaggtaaacacaaagcaacagttTCCACCTGGAGCTATTTCATgggactctacacttgtaaacactcgctccaatgggTTGGCGTGGCTCTCAACCCCGCCCACACACGCAAGCGCTACCAAGCCCACTAATAGAACGTGCGCTACGtgttgttgcgatgtgtagttacatttttggagagatgCGCCACGGCAAGGGCTATTCAACTGCGCGCAGGCTGCGTCGGACCATACAcgtgcatttgacgcagaagtataaatcagcctttacatgtCTTTATCTTGGCTGAACATGTTAAATTACAAGGTAGTCGAAAAAAGAAATCACTTTTAATATAGTGTAACTAAACAAACTATTCACAAGTAAACAGtcagttgattaaataaatttgagtatcattataaatgtaatatacatgTAAGGGACAATCATCAGATTTAGGTGTGTTAAAGGATATTAAGTGCACAACATCGAGGCAaagtttaatgtttagattattactGCAAGTTgaaatttaatatagttttaatttctaaatataacattttaaaaataaatatataggctatgtTCTGAATAATGCTCATGTCCATGCTTGTCATGCCACAAACATACTTATATTCTATGTATTTGACGATGCAGTCaatgcatgcactgaaaaaaatatgcttATAGGCTACCTTTACCTGCAGGTTTCGCTAGCTGGGCAAAACTTAGATAGGCTATTAATAATGGATAtacattaaatatgtttaattttatttgtgaaagcaagagagaaACTTGTGGGAGTGCTGTAATAAAGGAGTCTCAAATGACTAACAGTTGTGCATTACGGTAACGTGTTTTATTCGGGACATGGCATATGACAAATAATCgataacatttgagctggtttcagttattaatttttatttttaaaaatatatttatttaacaggtggcgcagtgggaagcgctctcacctcacagcaagaaggtc

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00003460 lncRNA downstream 409744 41874937 ~ 41876777 (-) True XLOC_001410
TCONS_00002312 lncRNA downstream 468740 41793301 ~ 41817781 (-) True XLOC_001409
TCONS_00003459 lncRNA downstream 525359 41757056 ~ 41761162 (-) True XLOC_001408
TCONS_00002970 lncRNA downstream 677819 41599218 ~ 41608702 (-) True XLOC_001406
TCONS_00003458 lncRNA downstream 695387 41588155 ~ 41591134 (-) True XLOC_001405
TCONS_00002971 lncRNA upstream 841029 43130890 ~ 43155453 (-) True XLOC_001416
TCONS_00003462 lncRNA upstream 1228348 43518209 ~ 43540087 (-) False XLOC_001417
TCONS_00003463 lncRNA upstream 1228348 43518209 ~ 43617169 (-) False XLOC_001417
TCONS_00002972 lncRNA upstream 1228494 43518355 ~ 43615138 (-) True XLOC_001417
TCONS_00002321 lncRNA upstream 1382808 43672669 ~ 43684583 (-) True XLOC_001418
TCONS_00002313 mRNA downstream 303939 41957210 ~ 41982582 (-) True XLOC_001411
TCONS_00002310 mRNA downstream 468737 41770842 ~ 41817784 (-) False XLOC_001409
TCONS_00002311 mRNA downstream 468779 41783365 ~ 41817742 (-) False XLOC_001409
TCONS_00002307 mRNA downstream 912404 41293964 ~ 41374117 (-) True XLOC_001401
TCONS_00002302 mRNA downstream 998607 41201586 ~ 41287914 (-) False XLOC_001400
TCONS_00002317 mRNA upstream 486692 42776553 ~ 42779075 (-) False XLOC_001414
TCONS_00002318 mRNA upstream 487081 42776942 ~ 42778510 (-) True XLOC_001414
TCONS_00002320 mRNA upstream 1362619 43652480 ~ 43684584 (-) False XLOC_001418
TCONS_00002322 mRNA upstream 1405172 43695033 ~ 43712120 (-) False XLOC_001419
TCONS_00002323 mRNA upstream 1421898 43711759 ~ 43727613 (-) False XLOC_001419
TCONS_00002314 other downstream 8871 42277523 ~ 42277650 (-) True XLOC_001412
TCONS_00002309 other downstream 685369 41601035 ~ 41601152 (-) True XLOC_001407
TCONS_00002308 other downstream 974629 41311777 ~ 41311892 (-) True XLOC_001402
TCONS_00002306 other downstream 1026243 41230815 ~ 41260278 (-) True XLOC_001400
TCONS_00002305 other downstream 1046937 41223078 ~ 41239584 (-) False XLOC_001400
TCONS_00002319 other upstream 684899 42974760 ~ 42974875 (-) True XLOC_001415
TCONS_00002327 other upstream 1430088 43719949 ~ 43725218 (-) False XLOC_001419
TCONS_00002392 other upstream 3026348 45316209 ~ 45317628 (-) True XLOC_001459
TCONS_00002410 other upstream 3365214 45655075 ~ 45662751 (-) True XLOC_001465
TCONS_00002426 other upstream 4337628 46627489 ~ 46630704 (-) True XLOC_001475

Expression Profile

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