RNA id: TCONS_00002410


Basic Information

Item Value
RNA id TCONS_00002410
length 799
RNA type processed_transcript
GC content 0.43
exon number 8
gene id XLOC_001465
representative True

Chromosome Information

Item Value
chromosome id NC_007112.7
NCBI id CM002885.2
chromosome length 59578282
location 45650285 ~ 45662774 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

GCTCTGTCAGGATACGTTTAGCTCACACTATATGGTGAACTTCAAGAGCAGGCGATTTGTATCCCTCGACGGGGTTTAAACTGCAATTCATAAGTGTGAGAATGCTTCCTGCCTTTATGAGCCTAAGACACTTTACCACAACCACAATGAGAAGAGCAGCGTCTGAATTCCGAATGCCCGTCCCATGGGGAGAGCTGAGAGGTCAAGTTTGGGGTCCTTCTCATGGTCGTCCTGTGCTTTGTTTGCACGGTTGGGCTGACAACAGCGGGACGTTCAATACCCTGGTTCCTTTGCTTCCTAATGACTGGAGATTTGTAGCCATTGATTTTCCAGGTCATGGTCTCTCATCTCATAGGCCTGATGGATGCTTTTACGCCTTCCCTTTTTATGTGGCCGATGTTCGACGAGTTGTTGAAGCTCTTCAGTGGAAGCGATTCTCTATAATTGGACACAGTATGGGTGGAAATGTGGCAGGAATGTTTAGCGCCTTGTACCCAGAGATGGTCGAATCTGTTGTCCTCCTTGATACTTACGGATTCCTTCCAACAGAAGTGACTGACATGTTTACAAACATGAGGAAGGGGATAAATGATCAAATCCAGTATGACAACATGGCCAATGAAAGGAAGGAGAGGGTCTACACGTATGAGAAAGCCAAAGAAAGGTAAAGAATACCTGTTTACTGACAAGCATGTAAAGCAGATTAGATTTTCATCTGTTTTCTACTCAGGAAAATATAgcaaacagtaatattgtgaagtAATGTGAAGTGATAATAACTATTTTACTTTTTGATAGA

Function

GO:

id name namespace
GO:0016787 hydrolase activity molecular_function
GO:0004377 GDP-Man molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-030131-1368 Predicted to enable hydrolase activity. Orthologous to several human genes including SERHL2 (serine hydrolase like 2).

Ensembl:

ensembl_id ENSDART00000125237

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00003466 lncRNA downstream 10582 45639132 ~ 45644493 (-) False XLOC_001464
TCONS_00002401 lncRNA downstream 83502 45570756 ~ 45571573 (-) False XLOC_001463
TCONS_00002390 lncRNA downstream 341199 45307161 ~ 45313876 (-) False XLOC_001458
TCONS_00002389 lncRNA downstream 341199 45307161 ~ 45313876 (-) True XLOC_001458
TCONS_00002385 lncRNA downstream 479593 45174356 ~ 45175482 (-) False XLOC_001456
TCONS_00003467 lncRNA upstream 34083 45696834 ~ 45700570 (-) True XLOC_001466
TCONS_00003468 lncRNA upstream 170024 45832775 ~ 45837990 (-) True XLOC_001468
TCONS_00003469 lncRNA upstream 176244 45838995 ~ 45839877 (-) True XLOC_001469
TCONS_00003470 lncRNA upstream 522467 46185218 ~ 46185851 (-) True XLOC_001471
TCONS_00002419 lncRNA upstream 608919 46271670 ~ 46276156 (-) False XLOC_001473
TCONS_00002408 mRNA downstream 7229 45644345 ~ 45647846 (-) True XLOC_001464
TCONS_00002406 mRNA downstream 18713 45616067 ~ 45636362 (-) False XLOC_001463
TCONS_00002407 mRNA downstream 21120 45616642 ~ 45633955 (-) True XLOC_001463
TCONS_00002404 mRNA downstream 38605 45577670 ~ 45616470 (-) False XLOC_001463
TCONS_00002405 mRNA downstream 38833 45577671 ~ 45616242 (-) False XLOC_001463
TCONS_00002411 mRNA upstream 81367 45744118 ~ 45752010 (-) False XLOC_001467
TCONS_00002412 mRNA upstream 81634 45744385 ~ 45750391 (-) False XLOC_001467
TCONS_00002413 mRNA upstream 87312 45750063 ~ 45752261 (-) True XLOC_001467
TCONS_00002414 mRNA upstream 203941 45866692 ~ 45920632 (-) False XLOC_001470
TCONS_00002415 mRNA upstream 207696 45870447 ~ 45888608 (-) False XLOC_001470
TCONS_00002392 other downstream 337447 45316209 ~ 45317628 (-) True XLOC_001459
TCONS_00002327 other downstream 1929857 43719949 ~ 43725218 (-) False XLOC_001419
TCONS_00002319 other downstream 2680200 42974760 ~ 42974875 (-) True XLOC_001415
TCONS_00002314 other downstream 3377425 42277523 ~ 42277650 (-) True XLOC_001412
TCONS_00002309 other downstream 4053923 41601035 ~ 41601152 (-) True XLOC_001407
TCONS_00002426 other upstream 964738 46627489 ~ 46630704 (-) True XLOC_001475
TCONS_00002434 other upstream 1059628 46722379 ~ 46722518 (-) False XLOC_001480
TCONS_00002435 other upstream 1059871 46722622 ~ 46722705 (-) False XLOC_001480
TCONS_00002436 other upstream 1063057 46725808 ~ 46743552 (-) True XLOC_001480
TCONS_00002442 other upstream 1282276 46945027 ~ 46945143 (-) True XLOC_001486

Expression Profile

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Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) CI01000119_02376084_02376695.mRNA True 572 mRNA 0.40 3 CI01000119 2376084 ~ 2376925 (+)