RNA id: TCONS_00002305


Basic Information

Item Value
RNA id TCONS_00002305
length 625
RNA type processed_transcript
GC content 0.50
exon number 5
gene id XLOC_001400
representative False

Chromosome Information

Item Value
chromosome id NC_007112.7
NCBI id CM002885.2
chromosome length 59578282
location 41201586 ~ 41287914 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

gcGAAGAGAGTCACTCACACATGTCTCTCTGTGTTCTCTTGCAGTCTGCAGCTGTCTCTGATGGTGAGCTTAACAGTGTGGACCTGAAAGGCTGCGGCAGTGATAACAGTCTGAACAGCAATGCCAGCCTACCTAGCGTGCAATGCCATAGACGGCACACTGAACGGCGCGTTGCATCGTGGGCCGTCTGCTTTGAGCGCCTGCTACAGGATCCCGTCGGTGTCCGATATTTCTCGGAGTTTCTAAAGAAGGAGTTTAGCGAagagaatattttattttggcaagctTGTGAATATTTCAGCCATGTACCTGAAACAGACAAGAAACAGCTGTCCCAGCGGGCCAGAGAGATCTACAACAGCTTCCTGTCTAGTAAAGCTACCACACCCGTCAACATTGATAGTCAAGCTCAGCTGGCTGACGACATCCTCAACGCACCGAGGCCAGACATGTTTAAAGAGCAACAGCTTCAGATCTTCAACCTGATGAAGTTTGACAGTTACACACGCTTCCTAAAGTCTTACCTGTATCAGGAATGTATGCTTGCAGAGGTGGAGGGCCGTCCACTTCCAGACCCCTACCAGGTGCCCAGTAGCCCCACATCCAAACATAGCACAGGTTCCGA

Function

GO:

id name namespace
GO:0007165 signal transduction biological_process
GO:0030695 GTPase regulator activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-031006-13 Predicted to enable GTPase activator activity. Predicted to act upstream of or within signal transduction. Predicted to be located in cytoplasm and dendrite. Is expressed in retina and ventricular zone. Orthologous to human RGS12 (regulator of G protein signaling 12).

Ensembl:

ensembl_id ENSDART00000134739

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00002969 lncRNA downstream 558373 40649944 ~ 40664705 (-) True XLOC_001394
TCONS_00003454 lncRNA downstream 564063 40648878 ~ 40659015 (-) False XLOC_001394
TCONS_00003453 lncRNA downstream 574933 40647644 ~ 40648145 (-) True XLOC_001393
TCONS_00003452 lncRNA downstream 884676 40333894 ~ 40338402 (-) True XLOC_001390
TCONS_00003451 lncRNA downstream 914453 40268545 ~ 40308625 (-) True XLOC_001389
TCONS_00003456 lncRNA upstream 251717 41491301 ~ 41493481 (-) True XLOC_001403
TCONS_00003457 lncRNA upstream 293080 41532664 ~ 41533488 (-) True XLOC_001404
TCONS_00003458 lncRNA upstream 348571 41588155 ~ 41591134 (-) True XLOC_001405
TCONS_00002970 lncRNA upstream 359634 41599218 ~ 41608702 (-) True XLOC_001406
TCONS_00003459 lncRNA upstream 517472 41757056 ~ 41761162 (-) True XLOC_001408
TCONS_00002300 mRNA downstream 30872 41142881 ~ 41192206 (-) False XLOC_001399
TCONS_00002301 mRNA downstream 31019 41155671 ~ 41192059 (-) True XLOC_001399
TCONS_00002299 mRNA downstream 228819 40992682 ~ 40994259 (-) True XLOC_001398
TCONS_00002298 mRNA downstream 308326 40912613 ~ 40914752 (-) True XLOC_001397
TCONS_00002297 mRNA downstream 311746 40909750 ~ 40911332 (-) True XLOC_001396
TCONS_00002307 mRNA upstream 54380 41293964 ~ 41374117 (-) True XLOC_001401
TCONS_00002310 mRNA upstream 531258 41770842 ~ 41817784 (-) False XLOC_001409
TCONS_00002311 mRNA upstream 543781 41783365 ~ 41817742 (-) False XLOC_001409
TCONS_00002313 mRNA upstream 717626 41957210 ~ 41982582 (-) True XLOC_001411
TCONS_00002315 mRNA upstream 1041724 42281308 ~ 42289704 (-) False XLOC_001413
TCONS_00002278 other downstream 1236918 39985905 ~ 39986160 (-) True XLOC_001380
TCONS_00002277 other downstream 1240025 39982172 ~ 39983053 (-) True XLOC_001379
TCONS_00002266 other downstream 1545158 39675706 ~ 39677920 (-) True XLOC_001374
TCONS_00002265 other downstream 1849167 39373802 ~ 39373911 (-) True XLOC_001373
TCONS_00002260 other downstream 2409660 38808689 ~ 38813418 (-) False XLOC_001371
TCONS_00002308 other upstream 72193 41311777 ~ 41311892 (-) True XLOC_001402
TCONS_00002309 other upstream 361451 41601035 ~ 41601152 (-) True XLOC_001407
TCONS_00002314 other upstream 1037939 42277523 ~ 42277650 (-) True XLOC_001412
TCONS_00002319 other upstream 1735176 42974760 ~ 42974875 (-) True XLOC_001415
TCONS_00002327 other upstream 2480365 43719949 ~ 43725218 (-) False XLOC_001419

Expression Profile

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