RNA id: TCONS_00002315


Basic Information

Item Value
RNA id TCONS_00002315
length 1070
RNA type mRNA
GC content 0.36
exon number 4
gene id XLOC_001413
representative False

Chromosome Information

Item Value
chromosome id NC_007112.7
NCBI id CM002885.2
chromosome length 59578282
location 42281308 ~ 42289861 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

ACAGAATCCAGTCAGATGGAAGCAAGACGCCAGAGCCGGATTTCTGTACATCCATTTGCACAGTACTGTACAACAAGTTTCCTTTGCTGAGTTCCTTGGTCaggggtttaaacacattttctgtCCAGTACTGCAGTTGGAATTTTCCATCAacatttttatgaCAACCAATGTCCATGTCAAAAGAGCGTCTATTCTTCAAGCTCTCTTTACTTACCTTGGTGAGGATGAGGCATGCCTGGTGAAAGAATACATGgaCAATCAAAAAGAAGAATTTTTGAAGGACCTGACAAACACCGCCATGGCCATATGTGTCATCAAAAAGGAAAGAGGAGATTATGAGGACATTGGCATCGTTGTGGATGGAACAGTGATTATTGAACAGATAAAATCTGTTGCACAAGCCTGTGCACTGATGTTGGGGGCAATTTATGTGCTTGATTTGGCCtacccaaaagaactcaaatacTATTACGAGTTTGCCCAAAAAGTACTTGTGCAAATGAACTCTGACAAGCTCTCCTCAAAGGTTCTCATACTGGAAAACAGTGTGATACTGTAATTTTAAGCATTGAAGTGTTAATAAATGCTCAACAACCAAAATGTATATCATATATAAATTGCAGTTTAGTGTAGGAATTGTTTAATAAGTGAATTCAGTTTTCTTTGTGTGCAAAATTAATTAGCTGTAGGAACTTGTTTTAaatggtgtgcgtgtgtgtgtgtgtatgtgtgagagagagagagagagaacatgtGCATTCTATAAACTTTGTATTTATTCCATTTCATACAACTTGTAGTTGCTCAATATGTTAATGAgtcattttttaaagttaattagttgattattttgtgtattggggtgtgtgtgtgtgtgtgtcataaggATTGCCGTTTGCTCCAAGACTTCATACAGTTTCTTTTATGTgttggtttaaattaaatgtgctgTACAAACTGTTTATTGTGTTATGGTGTGCTGCTAAAGCATTTTTAGGCAGTGATTtaggttttgttaaaaaaaatgcatcttaaaaagtcattaaaatgaattcaaaacaAATGTG

Function

GO: NA

KEGG: NA

Ensembl:

ensembl_id ENSDART00000150124

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00003460 lncRNA downstream 404531 41874937 ~ 41876777 (-) True XLOC_001410
TCONS_00002312 lncRNA downstream 463527 41793301 ~ 41817781 (-) True XLOC_001409
TCONS_00003459 lncRNA downstream 520146 41757056 ~ 41761162 (-) True XLOC_001408
TCONS_00002970 lncRNA downstream 672606 41599218 ~ 41608702 (-) True XLOC_001406
TCONS_00003458 lncRNA downstream 690174 41588155 ~ 41591134 (-) True XLOC_001405
TCONS_00002971 lncRNA upstream 841186 43130890 ~ 43155453 (-) True XLOC_001416
TCONS_00003462 lncRNA upstream 1228505 43518209 ~ 43540087 (-) False XLOC_001417
TCONS_00003463 lncRNA upstream 1228505 43518209 ~ 43617169 (-) False XLOC_001417
TCONS_00002972 lncRNA upstream 1228651 43518355 ~ 43615138 (-) True XLOC_001417
TCONS_00002321 lncRNA upstream 1382965 43672669 ~ 43684583 (-) True XLOC_001418
TCONS_00002313 mRNA downstream 298726 41957210 ~ 41982582 (-) True XLOC_001411
TCONS_00002310 mRNA downstream 463524 41770842 ~ 41817784 (-) False XLOC_001409
TCONS_00002311 mRNA downstream 463566 41783365 ~ 41817742 (-) False XLOC_001409
TCONS_00002307 mRNA downstream 907191 41293964 ~ 41374117 (-) True XLOC_001401
TCONS_00002302 mRNA downstream 993394 41201586 ~ 41287914 (-) False XLOC_001400
TCONS_00002317 mRNA upstream 486849 42776553 ~ 42779075 (-) False XLOC_001414
TCONS_00002318 mRNA upstream 487238 42776942 ~ 42778510 (-) True XLOC_001414
TCONS_00002320 mRNA upstream 1362776 43652480 ~ 43684584 (-) False XLOC_001418
TCONS_00002322 mRNA upstream 1405329 43695033 ~ 43712120 (-) False XLOC_001419
TCONS_00002323 mRNA upstream 1422055 43711759 ~ 43727613 (-) False XLOC_001419
TCONS_00002314 other downstream 3658 42277523 ~ 42277650 (-) True XLOC_001412
TCONS_00002309 other downstream 680156 41601035 ~ 41601152 (-) True XLOC_001407
TCONS_00002308 other downstream 969416 41311777 ~ 41311892 (-) True XLOC_001402
TCONS_00002306 other downstream 1021030 41230815 ~ 41260278 (-) True XLOC_001400
TCONS_00002305 other downstream 1041724 41223078 ~ 41239584 (-) False XLOC_001400
TCONS_00002319 other upstream 685056 42974760 ~ 42974875 (-) True XLOC_001415
TCONS_00002327 other upstream 1430245 43719949 ~ 43725218 (-) False XLOC_001419
TCONS_00002392 other upstream 3026505 45316209 ~ 45317628 (-) True XLOC_001459
TCONS_00002410 other upstream 3365371 45655075 ~ 45662751 (-) True XLOC_001465
TCONS_00002426 other upstream 4337785 46627489 ~ 46630704 (-) True XLOC_001475

Expression Profile

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