RNA id: TCONS_00075075


Basic Information

Item Value
RNA id TCONS_00075075
length 639
lncRNA type antisense_over
GC content 0.42
exon number 2
gene id XLOC_037014
representative True

Chromosome Information

Item Value
chromosome id NC_007120.7
NCBI id CM002893.2
chromosome length 56459846
location 14112475 ~ 14117000 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

TATTTCAAACaacaactttaatttaaaaacttgaACCTGAGCATGTTGTCTCCATGGAGAAGGGCATGCAGATGTCATTAACAGACATGAGACAgtgactttttattttcttttttttttttttacaatattgatTTTTTTGCAAACTTTACATTTCATTCCACACGTTAAAAATAATCAGCCCAACAGATGCCTGTACTGTACACAGACATGTGATGTAAACAAAGCAGAAGTATCAATAGGCTCATAGCATAACACAATTGAAACCCCAAACAGGAAGCAAATAGAACTTCTACCACCCACATGTGCTGTGAATACACACCGCAGTGTGGTCTGGCAACAAAATCCTTGTTCAAAATATGGGTTTTAACGCCCATTCATCTGGCCAGTTAATCTGTTAGATCTGCTTTCTGGTCTTGAAGGCAGAAATGCTCAACTCTTGAGATGTGGCATGAATACACACGCCTTGGAAGCTCTGAATGTCTAGGTTTATCTGGGTCGAGGTCAAAGGTCATCATGAGAGTGCAGGGTGTCGCTGGCCAGGCTGGAGCTGGAGGTTGGACTGGGGCTCAGGCTGACAGTACTCAGTAAACTCATGTCTGGAAGACTCATGGTGACCGACTGAAGTTCGCGATCAGG

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00075074 lncRNA upstream 640948 13469074 ~ 13471527 (+) True XLOC_037005
TCONS_00072842 lncRNA upstream 873446 13235020 ~ 13239029 (+) False XLOC_037003
TCONS_00072841 lncRNA upstream 878331 13233575 ~ 13234144 (+) False XLOC_037003
TCONS_00072835 lncRNA upstream 1022612 13076852 ~ 13089863 (+) True XLOC_037001
TCONS_00072832 lncRNA upstream 1168720 12943279 ~ 12943755 (+) False XLOC_037000
TCONS_00072873 lncRNA downstream 35168 14152168 ~ 14197503 (+) True XLOC_037016
TCONS_00075076 lncRNA downstream 1400533 15517533 ~ 15530690 (+) True XLOC_037018
TCONS_00074887 lncRNA downstream 1410611 15527611 ~ 15529457 (+) True XLOC_037019
TCONS_00075077 lncRNA downstream 1450576 15567576 ~ 15571007 (+) True XLOC_037020
TCONS_00075078 lncRNA downstream 1775490 15892490 ~ 15893112 (+) False XLOC_037022
TCONS_00072871 mRNA upstream 71188 14028157 ~ 14041287 (+) True XLOC_037013
TCONS_00072869 mRNA upstream 73700 14023393 ~ 14038775 (+) False XLOC_037013
TCONS_00072870 mRNA upstream 79348 14023942 ~ 14033127 (+) False XLOC_037013
TCONS_00072868 mRNA upstream 84473 14023386 ~ 14028002 (+) False XLOC_037013
TCONS_00072866 mRNA upstream 93085 14010823 ~ 14019390 (+) False XLOC_037012
TCONS_00072874 mRNA downstream 174932 14291932 ~ 14297132 (+) True XLOC_037017
TCONS_00072876 mRNA downstream 1720398 15837398 ~ 15841997 (+) True XLOC_037021
TCONS_00072877 mRNA downstream 1773558 15890558 ~ 15892666 (+) False XLOC_037022
TCONS_00072878 mRNA downstream 1776093 15893093 ~ 15894307 (+) False XLOC_037022
TCONS_00072879 mRNA downstream 1776241 15893241 ~ 15894501 (+) True XLOC_037022
TCONS_00072867 other upstream 98145 14010874 ~ 14014330 (+) True XLOC_037012
TCONS_00072865 other upstream 109222 13999803 ~ 14003253 (+) True XLOC_037011
TCONS_00072861 other upstream 325522 13765257 ~ 13786953 (+) True XLOC_037009
TCONS_00072854 other upstream 383539 13714411 ~ 13728936 (+) True XLOC_037008
TCONS_00072844 other upstream 663827 13448529 ~ 13448648 (+) True XLOC_037004
TCONS_00072872 other downstream 26073 14143073 ~ 14147153 (+) True XLOC_037015
TCONS_00072875 other downstream 1450364 15567364 ~ 15571007 (+) False XLOC_037020
TCONS_00072881 other downstream 1790033 15907033 ~ 15907820 (+) True XLOC_037024
TCONS_00072882 other downstream 1865344 15982344 ~ 15985797 (+) True XLOC_037025
TCONS_00072889 other downstream 3200167 17317167 ~ 17327506 (+) False XLOC_037031

Expression Profile

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