RNA id: TCONS_00075076


Basic Information

Item Value
RNA id TCONS_00075076
length 586
lncRNA type inter_gene
GC content 0.35
exon number 2
gene id XLOC_037018
representative True

Chromosome Information

Item Value
chromosome id NC_007120.7
NCBI id CM002893.2
chromosome length 56459846
location 15517533 ~ 15530690 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

CTCAGAACTGCTGGTACATTACATTTTGTCTAAACTTATACATTGTGATGTATAGtggttataaatgtaaataaaacatacatgaaAGTTAAATAAAACTGCCTCTATTCATCTCTCATCCAAATCACTATTTCAATACAGTAAACTTtagtgaaaataaatattaagcttATGTGACCAATAATCAAcactttttttaagaaaaggaACGACAGAACAGAATAAATACTCATAAACAGCAAAACACATAACATAATTCTAGCACGTGGAATATGTAGCATATGTGCTACGGCTAACACAGAACATCACAAAATAGTAATTAAACATACCTGGGACAAACACAGCACCAAAGATTTAGTTGGTTTGCAGCTCTGGTGATATCAGTgtcttaaagtgaaataaacagagtTTAAACGTTTCACAAATGCCTGATAATTAATAACTCATTAACCAGCGATCACCAAAGCAGCTTACCAGCAGAGAGGCTTCTCAGAACTGCTGGTGAATTACGTAGCAACGCCCCCTACTGTGATGGACGCTATTGCAGGTAAAAACCAATGGTAAGTGTTCCCAATTGAACCATGAA

Function

GO:

id name namespace
GO:0048731 system development biological_process
GO:0030154 cell differentiation biological_process
GO:0009653 anatomical structure morphogenesis biological_process
GO:0048856 anatomical structure development biological_process
GO:0032501 multicellular organismal process biological_process

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00072873 lncRNA upstream 1320030 14152168 ~ 14197503 (+) True XLOC_037016
TCONS_00075075 lncRNA upstream 1400533 14112475 ~ 14117000 (+) True XLOC_037014
TCONS_00075074 lncRNA upstream 2046006 13469074 ~ 13471527 (+) True XLOC_037005
TCONS_00072842 lncRNA upstream 2278504 13235020 ~ 13239029 (+) False XLOC_037003
TCONS_00072841 lncRNA upstream 2283389 13233575 ~ 13234144 (+) False XLOC_037003
TCONS_00075077 lncRNA downstream 36886 15567576 ~ 15571007 (+) True XLOC_037020
TCONS_00075078 lncRNA downstream 361800 15892490 ~ 15893112 (+) False XLOC_037022
TCONS_00072880 lncRNA downstream 370836 15901526 ~ 15906907 (+) True XLOC_037023
TCONS_00074888 lncRNA downstream 1245297 16775987 ~ 16776615 (+) True XLOC_037028
TCONS_00075079 lncRNA downstream 1695554 17226244 ~ 17227294 (+) True XLOC_037030
TCONS_00072874 mRNA upstream 1220401 14291932 ~ 14297132 (+) True XLOC_037017
TCONS_00072871 mRNA upstream 1476246 14028157 ~ 14041287 (+) True XLOC_037013
TCONS_00072869 mRNA upstream 1478758 14023393 ~ 14038775 (+) False XLOC_037013
TCONS_00072870 mRNA upstream 1484406 14023942 ~ 14033127 (+) False XLOC_037013
TCONS_00072868 mRNA upstream 1489531 14023386 ~ 14028002 (+) False XLOC_037013
TCONS_00072876 mRNA downstream 306708 15837398 ~ 15841997 (+) True XLOC_037021
TCONS_00072877 mRNA downstream 359868 15890558 ~ 15892666 (+) False XLOC_037022
TCONS_00072878 mRNA downstream 362403 15893093 ~ 15894307 (+) False XLOC_037022
TCONS_00072879 mRNA downstream 362551 15893241 ~ 15894501 (+) True XLOC_037022
TCONS_00072883 mRNA downstream 710966 16241656 ~ 16248098 (+) True XLOC_037026
TCONS_00072872 other upstream 1370380 14143073 ~ 14147153 (+) True XLOC_037015
TCONS_00072867 other upstream 1503203 14010874 ~ 14014330 (+) True XLOC_037012
TCONS_00072865 other upstream 1514280 13999803 ~ 14003253 (+) True XLOC_037011
TCONS_00072861 other upstream 1730580 13765257 ~ 13786953 (+) True XLOC_037009
TCONS_00072854 other upstream 1788597 13714411 ~ 13728936 (+) True XLOC_037008
TCONS_00072875 other downstream 36674 15567364 ~ 15571007 (+) False XLOC_037020
TCONS_00072881 other downstream 376343 15907033 ~ 15907820 (+) True XLOC_037024
TCONS_00072882 other downstream 451654 15982344 ~ 15985797 (+) True XLOC_037025
TCONS_00072889 other downstream 1786477 17317167 ~ 17327506 (+) False XLOC_037031
TCONS_00072896 other downstream 2132260 17662950 ~ 17663065 (+) True XLOC_037038

Expression Profile

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