RNA id: TCONS_00072841


Basic Information

Item Value
RNA id TCONS_00072841
length 477
lncRNA type retained_intron
GC content 0.33
exon number 2
gene id XLOC_037003
representative False

Chromosome Information

Item Value
chromosome id NC_007120.7
NCBI id CM002893.2
chromosome length 56459846
location 13229585 ~ 13251327 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

CAGGCGTCTTTGTGGAAAAAAGACAGCAGCCTGTCATCACAACCATAAAAGAGAATGACGGTGCTCATAGTTTACCTGCAACAACGGCTCAGAATATCACTGCTATTAAAATTCAGAAGAAAAGTTTTCCTGATGTATTTGAGCCCCCGGTAAAGCCACTGCCACCAGGGTCACCAAACTGGGCTCTCAGACTGCGCGGGTGTGAGGTTTGTCCAGTGACAAGTTTATAGGATTTAAGATTTACAAAATTAAgtttatgtttaatatttaataaatttaatcaaatttaatttaatattatattatatatgcaaaaattaagtgTACATGTAGGACCATTACGGTTGTTTTGTTTTCCTGCattgatttaattttatgttaGTTGACCATATATTGTCCACGagtaatcattttaatttttaagatattcttttaatattctcATGTTTTAACTGATGATTCTTGATACTGTATTAC

Function

GO:

id name namespace
GO:0061400 positive regulation of transcription from RNA polymerase II promoter in response to calcium ion biological_process
GO:0035865 cellular response to potassium ion biological_process
GO:0005634 nucleus cellular_component
GO:0001228 DNA-binding transcription activator activity, RNA polymerase II-specific molecular_function
GO:0003677 DNA binding molecular_function
GO:0003700 DNA-binding transcription factor activity molecular_function

KEGG:

id description
ko03000 Transcription factors

ZFIN:

id description
ZDB-GENE-070912-172 Predicted to enable DNA-binding transcription factor activity, RNA polymerase II-specific and RNA polymerase II cis-regulatory region sequence-specific DNA binding activity. Predicted to be involved in regulation of transcription by RNA polymerase II. Predicted to act upstream of or within positive regulation of transcription from RNA polymerase II promoter in response to calcium ion. Predicted to be active in nucleus. Orthologous to human CARF (calcium responsive transcription factor).

Ensembl:

ensembl_id ENSDART00000156507

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00072835 lncRNA upstream 143712 13076852 ~ 13089863 (+) True XLOC_037001
TCONS_00072832 lncRNA upstream 289820 12943279 ~ 12943755 (+) False XLOC_037000
TCONS_00075073 lncRNA upstream 764532 12461619 ~ 12469043 (+) True XLOC_036995
TCONS_00072807 lncRNA upstream 2295106 10936773 ~ 10938469 (+) True XLOC_036987
TCONS_00075072 lncRNA upstream 2473462 10737086 ~ 10760113 (+) True XLOC_036985
TCONS_00072842 lncRNA downstream 876 13235020 ~ 13239029 (+) False XLOC_037003
TCONS_00075074 lncRNA downstream 234930 13469074 ~ 13471527 (+) True XLOC_037005
TCONS_00075075 lncRNA downstream 878331 14112475 ~ 14117000 (+) True XLOC_037014
TCONS_00072873 lncRNA downstream 918024 14152168 ~ 14197503 (+) True XLOC_037016
TCONS_00075076 lncRNA downstream 2283389 15517533 ~ 15530690 (+) True XLOC_037018
TCONS_00072836 mRNA upstream 20785 13120419 ~ 13212790 (+) True XLOC_037002
TCONS_00072834 mRNA upstream 122412 12959760 ~ 13111163 (+) False XLOC_037001
TCONS_00072830 mRNA upstream 279751 12907574 ~ 12953824 (+) False XLOC_037000
TCONS_00072833 mRNA upstream 282236 12948511 ~ 12951339 (+) True XLOC_037000
TCONS_00072831 mRNA upstream 289556 12934536 ~ 12944019 (+) False XLOC_037000
TCONS_00072845 mRNA downstream 394491 13628635 ~ 13672200 (+) False XLOC_037006
TCONS_00072846 mRNA downstream 394511 13628655 ~ 13635451 (+) False XLOC_037006
TCONS_00072847 mRNA downstream 404185 13638329 ~ 13640372 (+) False XLOC_037006
TCONS_00072848 mRNA downstream 407524 13641668 ~ 13672200 (+) True XLOC_037006
TCONS_00072849 mRNA downstream 447989 13682133 ~ 13711991 (+) False XLOC_037007
TCONS_00072822 other upstream 405455 12828005 ~ 12828120 (+) True XLOC_036996
TCONS_00072821 other upstream 778632 12444524 ~ 12454943 (+) True XLOC_036994
TCONS_00072820 other upstream 778817 12444519 ~ 12454758 (+) False XLOC_036994
TCONS_00072815 other upstream 1785666 11447777 ~ 11447909 (+) True XLOC_036991
TCONS_00072801 other upstream 2889595 10343864 ~ 10343980 (+) True XLOC_036980
TCONS_00072843 other downstream 4673 13238817 ~ 13246526 (+) True XLOC_037003
TCONS_00072844 other downstream 214385 13448529 ~ 13448648 (+) True XLOC_037004
TCONS_00072854 other downstream 480267 13714411 ~ 13728936 (+) True XLOC_037008
TCONS_00072861 other downstream 531113 13765257 ~ 13786953 (+) True XLOC_037009
TCONS_00072865 other downstream 765659 13999803 ~ 14003253 (+) True XLOC_037011

Expression Profile

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