RNA id: TCONS_00072848


Basic Information

Item Value
RNA id TCONS_00072848
length 2979
RNA type mRNA
GC content 0.49
exon number 25
gene id XLOC_037006
representative True

Chromosome Information

Item Value
chromosome id NC_007120.7
NCBI id CM002893.2
chromosome length 56459846
location 13628635 ~ 13672200 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

ATTGGCTACGTGAACCAGGTTTTTGGGGGAGGACTGAATTGTTTGGCTTTGGCCGATCAGAATGCAATGGGTTTTATATCAACAATCCATGAGCTTGCATCGGCAGAGAGGAAATTCTACTGCAGCCTCAGTAAACTGAAGAACCAGATCCTGAGCCCTCTGTTAGCCCGTGCAAGTTTGGCCTTGTCTCTGGGTGAGTCGTCCATGTTGCTCTTTCAAGAAATGGCTGGTAGTTTCAGCAAGCTTTGCCATCTGACAGGGCAACACTCAGTGTCCCTCACCAACTTCCTGCAGCAGGGCAAAGTGATCGAAACGCTGGTCTTGATCAAACACACAGCCATTTTTATGGATACCTATAAAGAGTACAGTGGTCCGGTTGGAAACTTTCTTGTTATGGGAGGCTTCCAGTCATTGCTGAAACCCTCACAAGAATGCTTTGGGAAGAAACTGGAGTTGATACAGGCTCTACTAGAATCCAAGGAGAAGAACCCGTCGCTCTATGATCTGTTAGTAAACTTGTTTTACATGCCCTTGCAACACTTGAATGGGTATAACAGGTTACTTCTGAAACTAGCCAACTGTTTTGAAGTGaacaCTGATGAATACCAGAGGATTCAAAATGGCTGCTCCAAATATGAGGCTTTAGCTCGCCTTGTCAGCAAGCAGAGAAAAGATGCTGAGGCCACTTTCCATTTCTGGAAGAACTTCAAAGGAAAGAATTTGGAAGCTCTGCGTAAGCCGTCCCGTCGTCTGGTATGTGAGAGCAGTAATAAAGGCCTAACGTTACAGAACGCTGGAAGATTTTCAGCCAGCTGGTTCATTCTCTTCAATGACGTGCTGGTTCATGCACAGTTCTCATCTCATTATGTCTATCCACTTGCTACACTCTGGGTGGAGCCCATCTCAGATGAAAGCTTGGGATTACTTGGCCTTAAGCTGACCACACCTGAAGATAGCTTTGTTGTGCTGGCAACGTCCCCTCTGGAAAAGGGCAAGTGGCTGAGAGCCATTAACCAGGCCATTGATGAAGTGCTGGTGTCAGGCATGAACGGGAGGACGCGTGTTTCTAGAAGCAGCCAGAAAGGTGAACCTCCTGTGTCCCGTACTTCCAACTACACCTTCAGCAAAGAGGGCCGACTTAAAGATGCCAAATATGAAGGCCGCTGGCTGTCAGGCAAACCTCACGGCAAagggaATTTGAAGTGGCCTGATGGGACAATGTACTGTGGCACATTCAAGAGTGGACTGGAAGATGGGTTTGGAGATTTTATGACGCCCAGTACCACCTTCAACAAGTTTGAGCGTTACCAAGGTCACTGGAAGGAAGGAAAAATGCATGGCTTTGGCACTTTCtgGTATGCTTCAGGTGAAGTCTATGAGGGCTCTTTCAGAGAGAACATGCGTCATGGTCACGGCATGTTACGCAGTGGGAAAGTGGCCTCTCCCTCGTCCAGTAGTGTGTTTGTGGGTCAGTGGGTTCAAGGGAAGAGGACAGGCTATGGGGTGTGTGATGACTTCAGCAGAGGAGAGAAGTACATGGGGATATGGCATGATGACCAGCGTCACGGAGACGGGGTTGTTATCACACAATTCGGATTGTATTATGAAGGAAACTTCTGTAATAACAGAATGATGGGCAATGGGACTCTTCTTTGTGATGACGACACAGTCTTTGAGGGTGACTTTCAGGATGACTGGACACTGTGTGGAAAGGTAACACTAGGAATTCTGTTCATGCCTAATGGAGACTCTTTTGATGGTGTCTTTGACGGCCACTGGGGGTCTGGACTGAGAGTGGCTGGAACTTTTACAAAACCCTTTGAAATAGCAAGGAGAGATATCAAGATGCCtgtGGCTGGTCAACATGCAGTTCCTGCAGAAGAAAAGTGGAAAGCCGTCTTTGAGGAATGCTGGAGCCGACTGGGCTGTGAAACCGCTGGTCAGGGGGCATTGGAGAAAGCCTGGGAGAACATCGCCATCTCCCTCACTGCCAAACGCAGACAACAGAGAGATCGttcAGAAGAGTTGAGCCGATCACAAACTAAGATGCTGGAGTGTCTTGAGGTGATTCCTCTGCATGAGGGCCCTGTTACTGCAAATTCCTACAACAACATCCGTCGGTATCTTGTAAAGGCTTGTGATACCCCTCTGCACCCACTGGGCTGGCTGCTGGAGACCCTTGTCACCGTGTACAGGATGACTTATGTTGGAGTGGGCTCTAGCAGACGCCTCCTGCAGCAGGCAGTGGAGGAGATCCAGTCATACCTAACACGCATTTTCCACATAGTCAGGTTTCTGTTTCCTGGTCTCCCTGAGGATGGAGGTTTTATTGTGGACTCGTCTTGTTCCTCAGATGAGGGCACAGACTCTCTGAACAGCAGTACTCATTCAGAAGCTCCACAGCAGGGTTGGACCGTGAGCAGCTCAAGTCTCCTCCTGCCGGTGCTACTGCCGAGGCTCTACCCTCCACTCTTCACCCTCTATACtttggagaaagagagagaggaggagCTGTACTGGAACTGTGTGTTAAGACTCAACAAACAGCCTGATCTAGCCCTTCTTGCATTCCTTGGggtgcaacaAAAATTCTGGCCGGTTTCTATCTCTGTATTGGGGGAAATAAAGAAGGTTCTGCCTAGTACTAAAGACGCCTGCTTTTCCACTGCTGTTGAAACCCTGCAACAGATCAGcacAGCATTCACTCCTTCAGACAAGTTGCAGGTGATACAGCTGACTTTTGAGGAGGTCACCCAGGACGTGCAGGCTATTCTTTGCCAGGACTTTTTGTGGTGCATGGACGACCTCTTTCCAATTTTCCTCTATGTGGTGCTGCGTGCACGGATCAGAAACCTGGGCTCTGAAGTGAGTCTGATAGAAGACCTCACAGACAGCAATCTACAGCTGGGACAACTGGGATTCATGCTGACAACTCTCAAAGCCTGTTACAACCAGATTCAGCTTGAGAAGACTACATAG

Function

GO:

id name namespace
GO:0035249 synaptic transmission, glutamatergic biological_process
GO:0007528 neuromuscular junction development biological_process
GO:0016197 endosomal transport biological_process
GO:0007409 axonogenesis biological_process
GO:0016050 vesicle organization biological_process
GO:0005769 early endosome cellular_component
GO:0030424 axon cellular_component
GO:0030425 dendrite cellular_component
GO:0043025 neuronal cell body cellular_component
GO:0005813 centrosome cellular_component
GO:0014069 postsynaptic density cellular_component
GO:0043197 dendritic spine cellular_component
GO:0005737 cytoplasm cellular_component
GO:0005085 guanyl-nucleotide exchange factor activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-070402-2 Predicted to enable guanyl-nucleotide exchange factor activity and small GTPase binding activity. Predicted to act upstream of or within several processes, including endosomal transport; glutamatergic synaptic transmission; and neuromuscular junction development. Predicted to be located in several cellular components, including centrosome; early endosome; and postsynaptic density. Is expressed in several structures, including gut; motor neurons; muscle; retinal neural layer; and spinal cord. Human ortholog(s) of this gene implicated in amyotrophic lateral sclerosis and amyotrophic lateral sclerosis type 2. Orthologous to human ALS2 (alsin Rho guanine nucleotide exchange factor ALS2).

Ensembl:

ensembl_id ENSDART00000135877

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00075074 lncRNA upstream 170141 13469074 ~ 13471527 (+) True XLOC_037005
TCONS_00072842 lncRNA upstream 402639 13235020 ~ 13239029 (+) False XLOC_037003
TCONS_00072841 lncRNA upstream 407524 13233575 ~ 13234144 (+) False XLOC_037003
TCONS_00072835 lncRNA upstream 551805 13076852 ~ 13089863 (+) True XLOC_037001
TCONS_00072832 lncRNA upstream 697913 12943279 ~ 12943755 (+) False XLOC_037000
TCONS_00075075 lncRNA downstream 440275 14112475 ~ 14117000 (+) True XLOC_037014
TCONS_00072873 lncRNA downstream 479968 14152168 ~ 14197503 (+) True XLOC_037016
TCONS_00075076 lncRNA downstream 1845333 15517533 ~ 15530690 (+) True XLOC_037018
TCONS_00074887 lncRNA downstream 1855411 15527611 ~ 15529457 (+) True XLOC_037019
TCONS_00075077 lncRNA downstream 1895376 15567576 ~ 15571007 (+) True XLOC_037020
TCONS_00072847 mRNA upstream 1296 13638329 ~ 13640372 (+) False XLOC_037006
TCONS_00072846 mRNA upstream 6217 13628655 ~ 13635451 (+) False XLOC_037006
TCONS_00072838 mRNA upstream 390341 13229607 ~ 13251327 (+) False XLOC_037003
TCONS_00072839 mRNA upstream 390637 13230214 ~ 13251031 (+) False XLOC_037003
TCONS_00072840 mRNA upstream 395449 13230241 ~ 13246219 (+) False XLOC_037003
TCONS_00072849 mRNA downstream 9933 13682133 ~ 13711991 (+) False XLOC_037007
TCONS_00072850 mRNA downstream 13721 13685921 ~ 13705019 (+) False XLOC_037007
TCONS_00072851 mRNA downstream 35733 13707933 ~ 13711991 (+) True XLOC_037007
TCONS_00072852 mRNA downstream 42179 13714379 ~ 13728937 (+) False XLOC_037008
TCONS_00072853 mRNA downstream 42211 13714411 ~ 13722605 (+) False XLOC_037008
TCONS_00072844 other upstream 193020 13448529 ~ 13448648 (+) True XLOC_037004
TCONS_00072843 other upstream 395142 13238817 ~ 13246526 (+) True XLOC_037003
TCONS_00072822 other upstream 813548 12828005 ~ 12828120 (+) True XLOC_036996
TCONS_00072821 other upstream 1186725 12444524 ~ 12454943 (+) True XLOC_036994
TCONS_00072820 other upstream 1186910 12444519 ~ 12454758 (+) False XLOC_036994
TCONS_00072854 other downstream 42211 13714411 ~ 13728936 (+) True XLOC_037008
TCONS_00072861 other downstream 93057 13765257 ~ 13786953 (+) True XLOC_037009
TCONS_00072865 other downstream 327603 13999803 ~ 14003253 (+) True XLOC_037011
TCONS_00072867 other downstream 338674 14010874 ~ 14014330 (+) True XLOC_037012
TCONS_00072872 other downstream 470873 14143073 ~ 14147153 (+) True XLOC_037015

Expression Profile

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