RNA id: TCONS_00072838


Basic Information

Item Value
RNA id TCONS_00072838
length 2916
RNA type mRNA
GC content 0.45
exon number 14
gene id XLOC_037003
representative False

Chromosome Information

Item Value
chromosome id NC_007120.7
NCBI id CM002893.2
chromosome length 56459846
location 13229585 ~ 13251327 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

GGAATCCTGGACGAAGACGAGGTTGAGTAGACTCGTTTTCAATTTTTCCTCCTTCCTGTATATAAAGCCCGGGCTCCACGGCATCCTGTGCACTGGGAAGAACTTCCACAGCGAGCTGACTcggaaaaagttatttaaaatcaGTCTGTCGCTCGAGATCAGcctgttttctttcttttacttgcTGTGTGTCGTTATGAAACTGCTCCGCTAGCGAGCATAGATCCAACATGGCGTTTATATTTAACGATATTAGTTTGTCACAATTTTGAAGCGCTGTCTGAAAATCTAAACTATAATACTTCACTTGGACCATAGACTATAACATTGTGTCTAAAATGAGTTAAGAGTTACACTGAACTGGATATTGTTGAGTAGTTGGTAGTCACcggttattgtttgtttattcaaaaCATTTGACCTGAATTCTGAAATCTACACTcgacttaacgttaacgttacatgtGCTATTGTGGATATGTTTCTATATCAACTATAAGCAGTTTCACCCCCACCACATTTGCTTCGACCACTAAAATCAATTTAtataaatcagttaaattaatgaacaattattgcTTATTTGTGATGTGTGTTGTTGATTTAGACAGCCGTGTGTCTGATTAGAGAATAAATGGAGGAGGAAGAGAGAGATGTGGAGGATGTTCTTAAGTCTGAAGGAGAAGATGCACAGCCTGCAGAAACACAAGCAGAAATGGTAAAGAAAGAGGAACCTGACACAATCCTAAACGCTGAAGAAACTGCACATGCACCAGAGCTTTCCTTAGTCATTCCAGCCCCTGATGTATCTGGGACGGCCAATCAGAAGCCCTCTATTCTACCACGATTGGATAACTTTGTTATAGTTGACCAAAACGGACATCCCATTCCGTATGAACGATTGgtgattGTGACAGGAGGGAATGGACAAATATTTGGCGTCCCGTCTGTGCCTTTAAGTGGCGCTCAGATGTTACTACCTCATGGTCAACTTttgaatgtagcaaagtcatcagGCGTCTTTGTGGAAAAAAGACAGCAGCCTGTCATCACAACCATAAAAGAGAATGACGGTGCTCATAGTTTACCTGCAACAACGGCTCAGAATATCACTGCTATTAAAATTCAGAAGAAAAGTTTTCCTGATGTATTTGAGCCCCCGGTAAAGCCACTGCCACCAGGGTCACCAAACTGGGCTCTCAGACTGCGCGGGTGTGAGAAGATCGGGGACTCGTACCGTGGTTACTGTAACACAGAGACCGAGCTGGAGGCTGTTCTGCTTCAACATAAGCAGCAGACCCACGCTGTTTTTGGCACCCGTCAGTCCCCATCCCCAGCTAAACCTGCCACCAGGCTTATGTGGAAATCACAGTATGTGCCCTACGATGGCATTCCCTTCGTTAATGCAGGTAGCAGAGCCATTGTAATGGAATGCCAGTTTGGTCCACGAAGGAAGGGCGTCCAACCTAAAAAAGGATCAGAGCAAGAAAAGTATCAAAACAAGCTCTACAAAGCTACCTGTCCTGCCAGaatatatATCAAGAAAGTCCGAAAGTTCCTGGAGTACAAGGTTCCAATAGACCCCAAAGTGAACAAGAAGGTGGTGCGACAAGAGCAGGAGAAAGCCTTCTTCAACCTTAAGAACAGTTTATGGGACGATGGAGGTGTTGTAAGGTATTACGTCCAGCTCCCTACAGAAAAAGCCCACCTGTACCATGATGTGGAGACTGTAAACCTGCCTCCTCTTCCAGATCAGATCTGCTTCACAGAAGACCATCCTCATGAAGAGGAAGACACAGAAGAGCTGGGGTTTCAAGCCATGCAGGACGTCCTTGTGGAGGATGGGGTATCCCTACCCGAGTCTCGACTACACCCGCTGGTGGCAGAGAAGATCTGTGAATTGGTGGCTCATGGTCATAACCAGGTCTACACCGTCCGCAAACAGCTCAGGAGGTTTGTTGAACGTGAGATGTTCAAGTCAGAGGAAGTGCCTGAGAGACACAATCTGTGTTACTTTCCCACCGTCAATGACATCAAGAACCACATCCACGAGGCGCAGAAAACTCTTGGACCACTGGACGGTTCAGATAATGAGTGGAAAGAGGAGGCTGATAACCTGCTATCAGAGACCTTGACATTGACCCTTACTCCTGCTACTGTAGACGTTTCCTCTGAGAAGGAAGAGCTCATGGAAGGAAGTGACACTCTTTCTTCAGAGGCTGTGCATCTCTTCAGCTCCCTCACATCACTGCAGCCCAAGATCTTTGCACATCTACAGACCATTCAGCTCCAGCCGCCCTTGTGTCCAGTGGAAGACCCTGCTCAACCTTTAACAGCAGCACCAGAAGCCCAAGAGCTGTCCAGCCCTGCAGCCTCACAGCCTGCACTCCTGAGTCCATCCCAATTTCTCCAGTCTAGTCCCAGTGCTGGCGAAGGCAGGTCTGTGTGTGAGACCCCGACCCTGCTTGGCATGAACCAGCTAGTGAGTGTCTCTAATGCTGGAGCTAATGGAGGAATCACACAGATCCTGCTGGAGGATGGACAGGCTATTCCAGTCCAGATTGTGGAGCCGGCAAACATAGcATTGACTCCCTCAGCGGACGCCACTTCTGTGAAGTAGGATTGTGGGAAACCCATGGATGTGTCAGCAGCATTAGACGGAGGCTGAGAATACAAtggagaaaagaaaacaaaccttgaCGTCTGTAAACTGTCAGCGAATGACTCTTTGATCACTGGAGGACTGATTCATTGTATTAGTGACAGTATTATGTGAACATTGATatcaatttttttcattttcagttatggctatttttatttattacagtgaGGACTGTAGATACATTGGATTTCTCAAGCTCTCATTCAGTAGAACTGAATAAATGAGAtcagaattaaatatttaaaactaaa

Function

GO:

id name namespace
GO:0061400 positive regulation of transcription from RNA polymerase II promoter in response to calcium ion biological_process
GO:0035865 cellular response to potassium ion biological_process
GO:0005634 nucleus cellular_component
GO:0001228 DNA-binding transcription activator activity, RNA polymerase II-specific molecular_function
GO:0003677 DNA binding molecular_function
GO:0003700 DNA-binding transcription factor activity molecular_function

KEGG:

id description
ko03000 Transcription factors

ZFIN:

id description
ZDB-GENE-070912-172 Predicted to enable DNA-binding transcription factor activity, RNA polymerase II-specific and RNA polymerase II cis-regulatory region sequence-specific DNA binding activity. Predicted to be involved in regulation of transcription by RNA polymerase II. Predicted to act upstream of or within positive regulation of transcription from RNA polymerase II promoter in response to calcium ion. Predicted to be active in nucleus. Orthologous to human CARF (calcium responsive transcription factor).

Ensembl:

ensembl_id ENSDART00000141705

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00072835 lncRNA upstream 139744 13076852 ~ 13089863 (+) True XLOC_037001
TCONS_00072832 lncRNA upstream 285852 12943279 ~ 12943755 (+) False XLOC_037000
TCONS_00075073 lncRNA upstream 760564 12461619 ~ 12469043 (+) True XLOC_036995
TCONS_00072807 lncRNA upstream 2291138 10936773 ~ 10938469 (+) True XLOC_036987
TCONS_00075072 lncRNA upstream 2469494 10737086 ~ 10760113 (+) True XLOC_036985
TCONS_00075074 lncRNA downstream 217747 13469074 ~ 13471527 (+) True XLOC_037005
TCONS_00075075 lncRNA downstream 861148 14112475 ~ 14117000 (+) True XLOC_037014
TCONS_00072873 lncRNA downstream 900841 14152168 ~ 14197503 (+) True XLOC_037016
TCONS_00075076 lncRNA downstream 2266206 15517533 ~ 15530690 (+) True XLOC_037018
TCONS_00074887 lncRNA downstream 2276284 15527611 ~ 15529457 (+) True XLOC_037019
TCONS_00072836 mRNA upstream 16817 13120419 ~ 13212790 (+) True XLOC_037002
TCONS_00072834 mRNA upstream 118444 12959760 ~ 13111163 (+) False XLOC_037001
TCONS_00072830 mRNA upstream 275783 12907574 ~ 12953824 (+) False XLOC_037000
TCONS_00072845 mRNA downstream 377308 13628635 ~ 13672200 (+) False XLOC_037006
TCONS_00072846 mRNA downstream 377328 13628655 ~ 13635451 (+) False XLOC_037006
TCONS_00072847 mRNA downstream 387002 13638329 ~ 13640372 (+) False XLOC_037006
TCONS_00072848 mRNA downstream 390341 13641668 ~ 13672200 (+) True XLOC_037006
TCONS_00072849 mRNA downstream 430806 13682133 ~ 13711991 (+) False XLOC_037007
TCONS_00072822 other upstream 401487 12828005 ~ 12828120 (+) True XLOC_036996
TCONS_00072821 other upstream 774664 12444524 ~ 12454943 (+) True XLOC_036994
TCONS_00072820 other upstream 774849 12444519 ~ 12454758 (+) False XLOC_036994
TCONS_00072815 other upstream 1781698 11447777 ~ 11447909 (+) True XLOC_036991
TCONS_00072801 other upstream 2885627 10343864 ~ 10343980 (+) True XLOC_036980
TCONS_00072844 other downstream 197202 13448529 ~ 13448648 (+) True XLOC_037004
TCONS_00072854 other downstream 463084 13714411 ~ 13728936 (+) True XLOC_037008
TCONS_00072861 other downstream 513930 13765257 ~ 13786953 (+) True XLOC_037009
TCONS_00072865 other downstream 748476 13999803 ~ 14003253 (+) True XLOC_037011
TCONS_00072867 other downstream 759547 14010874 ~ 14014330 (+) True XLOC_037012

Expression Profile

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