RNA id: TCONS_00072835


Basic Information

Item Value
RNA id TCONS_00072835
length 591
lncRNA type retained_intron
GC content 0.50
exon number 3
gene id XLOC_037001
representative True

Chromosome Information

Item Value
chromosome id NC_007120.7
NCBI id CM002893.2
chromosome length 56459846
location 12959760 ~ 13111163 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

GcgagtgtaaacagggcctgcaCAATATGGACATGATAGAGGCTGCGCCATCTGAACCTTCGCTGGATTTAGACAGTTTAAAGCTCCTCGAACTGATTGGCCGAGGCCGCTACGGTTCCGTCTACAAGGGGTCTCTTGACGAACGGCCGGTTGCAGTAAAAGTTTTTACCTATGCCAACCGGCAGAACTTTGTGAATGAGCGCTCCATCTACCGAGTGCCTCTTCTGGAGCATGAAAACATTGCTCGCTTTATCGTCGGCGATGAGCGGATGACCACTGACGGACGCATGGAGTACCTGCTGGTCATGGAGTACTACCCTCATggcTCGCTGTGCCGCTATCTGAGTCTGCACACGCTGGACTGGGTGAGCTGCTGTCGTCTGGCTCATTCACTGACCAGAGGACTGGCCTATCTGCACACTGAGCTCCTGAGAGGAGGTGAGGCCCACACACGTCATTTACACCTCCTACTGCATACTGTATTTACAGGAAAAGTTGAACTGTTTGCATTATCAAGAGAAACAAGCAAGCTGGCATTGAGTATGCCACTTACTCATTACTTATTATTATCCCCAAAATATTGagatattg

Function

GO:

id name namespace
GO:0007178 transmembrane receptor protein serine/threonine kinase signaling pathway biological_process
GO:0002040 sprouting angiogenesis biological_process
GO:0003146 heart jogging biological_process
GO:0071363 cellular response to growth factor stimulus biological_process
GO:0048570 notochord morphogenesis biological_process
GO:0030509 BMP signaling pathway biological_process
GO:0006468 protein phosphorylation biological_process
GO:0007368 determination of left/right symmetry biological_process
GO:0016310 phosphorylation biological_process
GO:0001944 vasculature development biological_process
GO:0001945 lymph vessel development biological_process
GO:0001947 heart looping biological_process
GO:0005886 plasma membrane cellular_component
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0043235 receptor complex cellular_component
GO:0016740 transferase activity molecular_function
GO:0005524 ATP binding molecular_function
GO:0000166 nucleotide binding molecular_function
GO:0004672 protein kinase activity molecular_function
GO:0004674 protein serine/threonine kinase activity molecular_function
GO:0004675 transmembrane receptor protein serine/threonine kinase activity molecular_function
GO:0016301 kinase activity molecular_function
GO:0005024 transforming growth factor beta-activated receptor activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-070618-2 Enables transforming growth factor beta-activated receptor activity. Acts upstream of or within BMP signaling pathway; embryonic organ morphogenesis; and vasculature development. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be part of receptor complex. Predicted to be active in plasma membrane. Is expressed in several structures, including blood island; cardiovascular system; gonad; gut; and posterior pronephric duct. Human ortholog(s) of this gene implicated in heart septal defect; primary pulmonary hypertension; pulmonary hypertension; and pulmonary venoocclusive disease. Orthologous to human BMPR2 (bone morphogenetic protein receptor type 2).

Ensembl:

ensembl_id ENSDART00000137937

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00072832 lncRNA upstream 133097 12943279 ~ 12943755 (+) False XLOC_037000
TCONS_00075073 lncRNA upstream 607809 12461619 ~ 12469043 (+) True XLOC_036995
TCONS_00072807 lncRNA upstream 2138383 10936773 ~ 10938469 (+) True XLOC_036987
TCONS_00075072 lncRNA upstream 2316739 10737086 ~ 10760113 (+) True XLOC_036985
TCONS_00074886 lncRNA upstream 2511906 10562638 ~ 10564946 (+) True XLOC_036982
TCONS_00072841 lncRNA downstream 143712 13233575 ~ 13234144 (+) False XLOC_037003
TCONS_00072842 lncRNA downstream 145157 13235020 ~ 13239029 (+) False XLOC_037003
TCONS_00075074 lncRNA downstream 379211 13469074 ~ 13471527 (+) True XLOC_037005
TCONS_00075075 lncRNA downstream 1022612 14112475 ~ 14117000 (+) True XLOC_037014
TCONS_00072873 lncRNA downstream 1062305 14152168 ~ 14197503 (+) True XLOC_037016
TCONS_00072830 mRNA upstream 123028 12907574 ~ 12953824 (+) False XLOC_037000
TCONS_00072833 mRNA upstream 125513 12948511 ~ 12951339 (+) True XLOC_037000
TCONS_00072831 mRNA upstream 132833 12934536 ~ 12944019 (+) False XLOC_037000
TCONS_00072829 mRNA upstream 161195 12905591 ~ 12915657 (+) False XLOC_037000
TCONS_00072827 mRNA upstream 173285 12894578 ~ 12903567 (+) False XLOC_036999
TCONS_00072836 mRNA downstream 30556 13120419 ~ 13212790 (+) True XLOC_037002
TCONS_00072837 mRNA downstream 139722 13229585 ~ 13233872 (+) False XLOC_037003
TCONS_00072838 mRNA downstream 139744 13229607 ~ 13251327 (+) False XLOC_037003
TCONS_00072839 mRNA downstream 140351 13230214 ~ 13251031 (+) False XLOC_037003
TCONS_00072840 mRNA downstream 140378 13230241 ~ 13246219 (+) False XLOC_037003
TCONS_00072822 other upstream 248732 12828005 ~ 12828120 (+) True XLOC_036996
TCONS_00072821 other upstream 621909 12444524 ~ 12454943 (+) True XLOC_036994
TCONS_00072820 other upstream 622094 12444519 ~ 12454758 (+) False XLOC_036994
TCONS_00072815 other upstream 1628943 11447777 ~ 11447909 (+) True XLOC_036991
TCONS_00072801 other upstream 2732872 10343864 ~ 10343980 (+) True XLOC_036980
TCONS_00072843 other downstream 148954 13238817 ~ 13246526 (+) True XLOC_037003
TCONS_00072844 other downstream 358666 13448529 ~ 13448648 (+) True XLOC_037004
TCONS_00072854 other downstream 624548 13714411 ~ 13728936 (+) True XLOC_037008
TCONS_00072861 other downstream 675394 13765257 ~ 13786953 (+) True XLOC_037009
TCONS_00072865 other downstream 909940 13999803 ~ 14003253 (+) True XLOC_037011

Expression Profile

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