RNA id: TCONS_00072876


Basic Information

Item Value
RNA id TCONS_00072876
length 3365
RNA type mRNA
GC content 0.41
exon number 2
gene id XLOC_037021
representative True

Chromosome Information

Item Value
chromosome id NC_007120.7
NCBI id CM002893.2
chromosome length 56459846
location 15837398 ~ 15841997 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

cttgaagaccgacgggttaacatcactgctgaggaactgcactattcattgtcttcaataaagtcttctctccataagaactttggtcagcttactgattttatgtattagagtcatctgatacattggcgagccacccaagaacggttaagccaaatacagcaaaatctaacaatttggcgagccagccaggagagaCTGAAAAGAGGAAAACTCATCAACTGCAACAAGAAATGAACTGAAGAATCTTGGAGAATCTACAGTTAAAGCTGAAGATAAACGGATTTTGTTTGTGGACGAGTCCTGGATCTACATATTGTATCTGtggacacactttattttaatcaacTGGATCTCATCTCAAAGATCCTAGTTTGGGCACTGTCCTGTACTTCCCATGGCTGAGTCTGCAAGGAACTATGCTAATGGAGCTACCCTGAGAACAACATCAGAAAAGAATGGAACAGAACCTCCATGTGTTACCATTGATCAGATGTTGGAAAATCTGAATGAATATTTGGACAAAAGGCTGGGACTGAGGAAGTGTCGTGATGACGTGTGCAAGAAGTACAGCATCAAGCACTCAGAGAGTGGATTATGGGCATTGCCGGACATTAAAAGGGCTTATGGAAAGACACAGCGCTTATGCACAACCACCAAGAAGGATGGATTGTCTGTGATTTTGGTTAAGCAAATTCTTCAACATGAGCATAAGTGTAAGATTGACAGATTGGAACGTGAGAACAAAGCGGAGAAAGCTAAAGTTCGAGCACTGGCTGAACAATTGCAAAACTTAAAGAAGGATAAAGAAAGACTGGAAAAGGAAAACAACAAGCTATTGACTTTGATCTCTAAACAGCTGGAATCAAGATCTTCGAGCAGCTTTGTTGACAGTGAGGCTGATCTTTCCATCAACACCTGTGTTCATGACCCAGTGAACTCAAAGATTAGATTAGCTCCTGTGATTGTCAAACACAGAAGGACTAACGTTGAAATTGACAATGAGGAGGGCTATGAAGACAATGGAGAGAGACGAACTCGCACTGTGACAAAAGTGGTAAAGAAGTATGTTCCATACAGGACATACCATCCAGCTACTCCAGAGCAAGTTGACAAATGGACAAAAGAGCTGCCAGATGTATACAAACAACCACGAAAGGTTTGGCAGTTTCTTCAACGACTGCAGAAAATCTACATTTTACATCCACTAGACGGTGTGATGATTCTTAATGTCACCCTAAGAGAAAGTGACCAAAAGAGACTCACAGAAAGTGTTGAAAGAAGGATTGGTGAATCACAAGAAAACATAGAGGATGGATGGGAAGCCATAAAAAACTTCTTGTTTGAACTGAAACCTGCAGAGGTCAATTGGGCAAGAATTACCTCATGCATGCAGAAAACTGGAGAAAGTGTTGCAGAGTTTGAAGAACGCTTCAGACAAATATGGACGGAACATTCTGGTCTGAATACAAGTGAAGATCTTGACAAAGACACTGGAATTCCCCTGAAAACAGCATTTGTCAATGGACTCAATCCTGAGATTTCTAAAGATCTTAAAATCAGGTATGATGACTGGGACAGCACTGTAACAACTTTCATCCAGATTGTTGAATGGTCAGCTAAACTGGAGAGAGCACAAGATGTCAGACTCAGATCTTTGCAATCGGAAAGTTTGTTTTACAAGAACAGAAGAATTGAGGATGAGCAAAAAGAACGTGAGTATATGGGATACTCAAAACTACGAACTAAAGGAAGATGCAGAAATTGCAATGAAGAAGGACACTGGGCCCGTGAGTGCAAGCTCAGTTTAAAACATCAAAGTAAGGATGATGACCACCTGTTCAAGCAGTTTCAGCAGCtaacaatacaacaaaaacagACTCTGCTAAATGCTGTACAGCCGCAGGGAAACTGAAGAACCTCTCTCTGCAGCACCAGCTAGTGACGTCTTTTCCAGAAGCTGATGAACTGAATGTGTATGCAAACAGTAATATAAAAGCTGACACAGAAGTCTCAACAGATGAAGACAAGTTTGATGTCCTAGTAGATGGTGTTGCCAAACAAGCCGTAAAGGAGAGAGGTGAACATACAGCGGCATTAAGACAGCTTCAGCAAGACCACGGATCAGTCTTAGACAGAAAGCAGACTGCAAATGAAAACTCAACAAAAGAAATGCTGATGGACGGTGCAATAGAACTGCATGATGGCAACCAATGCAGTACAGATGGAAATAGACTATGCCTATTTGAACATGCCCTAAACCAGCCCATGTCCACAGAAAATCTTACATCTGACAGCCTTGTCCAAAACAAAGCAAGACTCAGCCTGGCAGTACATGAGGACATTAATCAAGTTTTGTCACCTCTGAAGAGGGGCCATAGTTTAGATCCCAGAAAATGGGTAAAGATACGACAACCTCAGATATTAACATTAAAATCTAGGAGTGAGAGCTCACATGAGAAGGTTTTAGTATCTGATTCAATAAATAAAGTTCAGGGACTTGATGAATGGATCAATGTGAGTTTGCCTAGAGACGAGGGATAGATGACAGTAGTGTTTTTCAGAGTCCAGATATGGCGGGACTAGAGTTTTTAGGCTCTAGCTTGTCACCTGAGGATGAAGACATAAACCACCACTGATAAACACTGTAGTGTCCTGTCAATATTAAATAGGGACAGTTTCTATAGTTTCTATAGGCAGTTTGACAATttctctaaaatctttttttgggCAAGATACGTTTCCCTTTTCTCTTTTGTGTGATTGCAGGTGTTCCGATGTTCCAGAGAATGACCAGAGACACACAACACCAGACACCTAGATGAACACACCTGAACATTCACAGAACACAACCACATCCGCTTCTTCCACAACATCACAACTTCAAATAGAAATGGACTCAGGCATATAAGGAATTGCAAGCTTCACCATGCCTTGTTATTCTGTCACTTTAAGTTATATAGCCTGTATTGCAGATTGCTGTATACATGATTAACTTGTTTTATGATCAAAAATGATCAGAGGAGGGATTGAAagattatgtgcattttagttcacttgcatttacattgattaaactCTGATGTGATATGATGGGGTGACCTGTGCCTCGACCCCCACAAACTGATAGGTGTGAACTAAATGACCCTTTTACAATCTCAATGGGTATTagcaaaacaacagctgaaacatctgaagagggtcctgctgagcttcgtaaacagaatggtttgtttgatgctaatataaagtactgtctcacagacagtactttgagttaagttacttgaagaccgacgggttaacatcactgctgaggaactgcactattcattgtcttcaataaagtcttctctccataagaa

Function

GO:

id name namespace
GO:0030902 hindbrain development biological_process
GO:0046872 metal ion binding molecular_function
GO:0003676 nucleic acid binding molecular_function
GO:0008270 zinc ion binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-110131-6 Predicted to enable nucleic acid binding activity and zinc ion binding activity. Acts upstream of or within hindbrain development. Is expressed in mesoderm and neuroectoderm.

Ensembl:

ensembl_id ENSDART00000141063

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00075077 lncRNA upstream 266391 15567576 ~ 15571007 (+) True XLOC_037020
TCONS_00075076 lncRNA upstream 306708 15517533 ~ 15530690 (+) True XLOC_037018
TCONS_00074887 lncRNA upstream 307941 15527611 ~ 15529457 (+) True XLOC_037019
TCONS_00072873 lncRNA upstream 1639895 14152168 ~ 14197503 (+) True XLOC_037016
TCONS_00075075 lncRNA upstream 1720398 14112475 ~ 14117000 (+) True XLOC_037014
TCONS_00075078 lncRNA downstream 50493 15892490 ~ 15893112 (+) False XLOC_037022
TCONS_00072880 lncRNA downstream 59529 15901526 ~ 15906907 (+) True XLOC_037023
TCONS_00074888 lncRNA downstream 933990 16775987 ~ 16776615 (+) True XLOC_037028
TCONS_00075079 lncRNA downstream 1384247 17226244 ~ 17227294 (+) True XLOC_037030
TCONS_00072887 lncRNA downstream 1467061 17309058 ~ 17311681 (+) False XLOC_037031
TCONS_00072874 mRNA upstream 1540266 14291932 ~ 14297132 (+) True XLOC_037017
TCONS_00072871 mRNA upstream 1796111 14028157 ~ 14041287 (+) True XLOC_037013
TCONS_00072869 mRNA upstream 1798623 14023393 ~ 14038775 (+) False XLOC_037013
TCONS_00072870 mRNA upstream 1804271 14023942 ~ 14033127 (+) False XLOC_037013
TCONS_00072868 mRNA upstream 1809396 14023386 ~ 14028002 (+) False XLOC_037013
TCONS_00072877 mRNA downstream 48561 15890558 ~ 15892666 (+) False XLOC_037022
TCONS_00072878 mRNA downstream 51096 15893093 ~ 15894307 (+) False XLOC_037022
TCONS_00072879 mRNA downstream 51244 15893241 ~ 15894501 (+) True XLOC_037022
TCONS_00072883 mRNA downstream 399659 16241656 ~ 16248098 (+) True XLOC_037026
TCONS_00072884 mRNA downstream 607401 16449398 ~ 16618607 (+) True XLOC_037027
TCONS_00072875 other upstream 266391 15567364 ~ 15571007 (+) False XLOC_037020
TCONS_00072872 other upstream 1690245 14143073 ~ 14147153 (+) True XLOC_037015
TCONS_00072867 other upstream 1823068 14010874 ~ 14014330 (+) True XLOC_037012
TCONS_00072865 other upstream 1834145 13999803 ~ 14003253 (+) True XLOC_037011
TCONS_00072861 other upstream 2050445 13765257 ~ 13786953 (+) True XLOC_037009
TCONS_00072881 other downstream 65036 15907033 ~ 15907820 (+) True XLOC_037024
TCONS_00072882 other downstream 140347 15982344 ~ 15985797 (+) True XLOC_037025
TCONS_00072889 other downstream 1475170 17317167 ~ 17327506 (+) False XLOC_037031
TCONS_00072896 other downstream 1820953 17662950 ~ 17663065 (+) True XLOC_037038
TCONS_00072903 other downstream 2146469 17988466 ~ 17998476 (+) True XLOC_037040

Expression Profile

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