RNA id: TCONS_00072884


Basic Information

Item Value
RNA id TCONS_00072884
length 2892
RNA type mRNA
GC content 0.51
exon number 17
gene id XLOC_037027
representative True

Chromosome Information

Item Value
chromosome id NC_007120.7
NCBI id CM002893.2
chromosome length 56459846
location 16449398 ~ 16618607 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

ATGGCTGATGTTTTGCGAGTGATGTTACTTTTCAGATGTGTGgatttcataattttatttaTTAACCTATTGGACTCCAAAGCAAGCCAAGGAGAGCTGGGTTGGATATCATCCCCATCCCATGGGTGGGAGGAAATTAGCGGCGTGGATGAGCACTACACACCCATCCGGACTTTCCAGGTGTGCAACGTGATGGAATACAGCCAGAACAATTGGTTGAGGACCAACTGGATTCCTCGTAATTCTGCACAGAAGATCTATGTGGAGCTCAAGTTTACCCTAAGAGATTGCAATAGTATTCCCATGGTCCTGACCTGCAAAGAAACATTCAACTTACACTATCTGGAGACAGAAGAAGACCAGGGAAATAAGTTCCGTGAGCACCAGTTTTCCAAAATAGATACAATCGCCGCAGATGAGAGCTTTACTCAGATGGACCTAGGTGACCGCATTCTGAAGTTAAACACAGAGGTCCGTGAGGTGGGGCCCATGACTAAGAAGGGCTTCTACCTGGCTTTCCAGGACGTGGGAGCCTGTGTGGCCCTAGTGTCGGTGCGGGTGTACTTTAAAAAATGCCCTTTCACAGTGAGGAACCTGGCTATGTTTCCTGACACGGTTCCTACAGACTCTCAGTCACTGGTGGAAGTTAGGGGCTCCTGCGTCAACAATTCCAAGGAGGAGGATCCACCAAAAATGTACTGCAGTACCGAGGGAGAGTGGCTGGTGCCTATTGGGAAATGCCTGTGCAACATAGGTTACGAGGAGCGGGGAGTCGCTTGCCAAGCCTGCCGGCCCGGTTTCTATAAGGCTTCATCTGGGAACGTCAAGTGCTCCAAGTGTCCTCCACACAGCTACACACACCAGGAGGGATCTGTACACTGCGGCTGTGAGAAAAATTACTTTCGAGCAGACGAGGACCCTGCCTCCATGGCCTGCTCTCGTCCTCCCTCTGCCCCTCGCAATGTGATCTCTGCCATTAACGAGACCTCAGTGATTCTAGACTGGAACTGGCCAGCAGACAACGGAGGCAGAAAGGATGTAATATTTAACGTGGTCTGCAAGCGATGTTGGCCGGGTCCCAGACAGTGTGAACCCTGTCGAGGGGCTGTGCGCTTCCTGCCCCGTGCTtttggcctcactaacacaacCGTAACTGTGGCAGACCTCCTGGCACACACCAACTACACCTTTGAGATTGAGGCCCAAAATGGAGTGTCTTTTCAGGCCCCCACAATCCGCCAGTACGCTGCGGTCACCATCACTACAAATCAAGCAGCGCCATCTGCAGTGACTGTCATCAGGAAGGATCGAACATCAAGAAACAGCATCTCACTGTCTTGGATGGAGCCAGAGAGACCCAATGGAATAATTCTGGACTATGAGGTCAAATACTATGAGAAGCAGGAACAAGAGACGAGCTACACCATCCTGAGGTCGAAGGGTACAAATGTTACACTGAACGGACTGAAACCTGACACCACCTACCTGCTGCAGATCAGAGCTCGTACTGCTGCCGGTTACGGCAGCAGCAGCCGCAAGTTTGAGTTCGAGACCAGCCCAGACTCCTTTTCTATCTCCAGTGAGAACAGCCAAGTAGTGCTGATCGCTATCTCCTCCGCCGTGGCCATCATCCTCCTCACTGTAGTGCTCTACATTGTGATTAGCAGGTTTTGCAGGTACAGTAAGTCCAAACATCCGGACGAAAAGAGGCTGCCTTTTGGCAACGGCCACTTGAGACTGCCTGGCATTAAGACCTATGTGGACCCGCATACTTACGAAGACCCGAGTCAAGCCGTGCATGAATTCGCCAAGGAACTGGATGCGTCTAGTATTGCCATTGACAAAGTTGTTGGGGCAGGGGAGTTTGGAGAGGTGTGTAGTGGCAGACTGAAGCTGCCATCTAAGAAGGAGATCTGCGTGGCCATCAAGACACTCAAAGCTGGATACACAGAGAAACAAAGACGGGACTTTCTCAGTGAAGCGAGCATCATGGGACAGTTTGATCACCCTAACATCATCAGATTGGAGGGTGTGGTAACACGCAgTAAACCTGTGATGATAGTGACCGAGTACATGGAGAACGGCTCCTTGGATGGCTTCCTGCGAAAACACGACGCCCAGTTCACAGTGATTCAGCTGGTGGGCATGCTACGTGGCATTGCGTCTGGGATGAAGTATCTGTCGGATATGGGTTACGTGCACAGAGACCTAGCCGCTCGGAACATCCTGGTCAACAGCAATCTAGTGTGTAAAGTGTCAGACTTCGGCTTGTCCAGAGTGTTAGAGGATGACCCAGAAGCGGCCTACACAACAAGAGGTGGCAAGATTCCAATCCGATGGACTGCGCCAGAAGCCATCGCCTATCGCAAGTTCACCTCAGCCAGTGACGTATGGAGCTATGGGATTGTGCTATGGGAGGTCATGTCTTACGGAGAAAGGCCTTATTGGGAGATGTCCAATCAGGACgtAATAAAAGCAGTGGATGAAGGATATCGTCTTCCCCCACCCATGGAATGCCCTGCCACACTTTACCAGCTAATGctagactgctggcagaaagacAGAAACAACCGGCCGAAATTTGAACAGATTGTCAGCATTCTGGACAAGCTTATCCGCAACCCTAGCAGTCTGAAGATCACAGCCAGCACTGCTTCCAGACCGGTAAATTTACTTCTGGACAGGAACAGCACTGATATCACTTCTTTTCACACAATGGGAGATTGGCTGGAGAGTGCGAGGACGTTGCCCTGTAAAGATGCATTCAGCGGTGTTAGCTACAGCTCCTGTGATACACTGGCCAAAACCTCAGCAGAAATCTGTCTGACTGAAGTCAGACCAGCAGCCACGTGCCCTGAGTGGGAGCCATCCATGGGAATTACAACACTTTAA

Function

GO:

id name namespace
GO:0007509 mesoderm migration involved in gastrulation biological_process
GO:0033674 positive regulation of kinase activity biological_process
GO:0001756 somitogenesis biological_process
GO:0007275 multicellular organism development biological_process
GO:0006468 protein phosphorylation biological_process
GO:0007411 axon guidance biological_process
GO:0016310 phosphorylation biological_process
GO:0007169 transmembrane receptor protein tyrosine kinase signaling pathway biological_process
GO:0043005 neuron projection cellular_component
GO:0005887 integral component of plasma membrane cellular_component
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0043235 receptor complex cellular_component
GO:0016740 transferase activity molecular_function
GO:0005524 ATP binding molecular_function
GO:0000166 nucleotide binding molecular_function
GO:0004672 protein kinase activity molecular_function
GO:0016301 kinase activity molecular_function
GO:0005003 ephrin receptor activity molecular_function
GO:0005005 transmembrane-ephrin receptor activity molecular_function
GO:0004713 protein tyrosine kinase activity molecular_function
GO:0004714 transmembrane receptor protein tyrosine kinase activity molecular_function

KEGG:

id description
ko04360 Axon guidance
ko01001 Protein kinases

ZFIN:

id description
ZDB-GENE-010724-10 Predicted to enable transmembrane-ephrin receptor activity. Acts upstream of or within mesoderm migration involved in gastrulation and somitogenesis. Predicted to be located in plasma membrane. Predicted to be integral component of membrane. Predicted to be part of receptor complex. Predicted to be active in neuron projection. Predicted to be integral component of plasma membrane. Is expressed in optic cup. Human ortholog(s) of this gene implicated in pancreatic cancer. Orthologous to human EPHA3 (EPH receptor A3).

Ensembl:

ensembl_id ENSDART00000006787

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00072880 lncRNA upstream 542491 15901526 ~ 15906907 (+) True XLOC_037023
TCONS_00075078 lncRNA upstream 556286 15892490 ~ 15893112 (+) False XLOC_037022
TCONS_00075077 lncRNA upstream 878391 15567576 ~ 15571007 (+) True XLOC_037020
TCONS_00075076 lncRNA upstream 918708 15517533 ~ 15530690 (+) True XLOC_037018
TCONS_00074888 lncRNA downstream 157380 16775987 ~ 16776615 (+) True XLOC_037028
TCONS_00075079 lncRNA downstream 607637 17226244 ~ 17227294 (+) True XLOC_037030
TCONS_00072887 lncRNA downstream 690451 17309058 ~ 17311681 (+) False XLOC_037031
TCONS_00072890 lncRNA downstream 712895 17331502 ~ 17334523 (+) True XLOC_037031
TCONS_00074889 lncRNA downstream 718544 17337151 ~ 17343544 (+) True XLOC_037032
TCONS_00072883 mRNA upstream 201300 16241656 ~ 16248098 (+) True XLOC_037026
TCONS_00072879 mRNA upstream 554897 15893241 ~ 15894501 (+) True XLOC_037022
TCONS_00072878 mRNA upstream 555091 15893093 ~ 15894307 (+) False XLOC_037022
TCONS_00072877 mRNA upstream 556732 15890558 ~ 15892666 (+) False XLOC_037022
TCONS_00072876 mRNA upstream 607401 15837398 ~ 15841997 (+) True XLOC_037021
TCONS_00072885 mRNA downstream 235514 16854121 ~ 16859169 (+) True XLOC_037029
TCONS_00072886 mRNA downstream 687555 17306162 ~ 17334658 (+) False XLOC_037031
TCONS_00072888 mRNA downstream 690588 17309195 ~ 17334656 (+) False XLOC_037031
TCONS_00072891 mRNA downstream 730138 17348745 ~ 17386456 (+) True XLOC_037033
TCONS_00072892 mRNA downstream 805334 17423941 ~ 17425867 (+) True XLOC_037034
TCONS_00072882 other upstream 463601 15982344 ~ 15985797 (+) True XLOC_037025
TCONS_00072881 other upstream 541578 15907033 ~ 15907820 (+) True XLOC_037024
TCONS_00072875 other upstream 878391 15567364 ~ 15571007 (+) False XLOC_037020
TCONS_00072872 other upstream 2302245 14143073 ~ 14147153 (+) True XLOC_037015
TCONS_00072867 other upstream 2435068 14010874 ~ 14014330 (+) True XLOC_037012
TCONS_00072889 other downstream 698560 17317167 ~ 17327506 (+) False XLOC_037031
TCONS_00072896 other downstream 1044343 17662950 ~ 17663065 (+) True XLOC_037038
TCONS_00072903 other downstream 1369859 17988466 ~ 17998476 (+) True XLOC_037040
TCONS_00072905 other downstream 1545022 18163629 ~ 18164027 (+) True XLOC_037042
TCONS_00072908 other downstream 1697796 18316403 ~ 18316520 (+) True XLOC_037044

Expression Profile

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Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) CI01000080_04517413_04566482.mRNA True 4144 mRNA 0.48 23 CI01000080 4516905 ~ 4566695 (-)
bowfin (Amia calva) AMCG00014257 True 5342 mRNA 0.50 14 CM030128.1 6814181 ~ 6860542 (-)