RNA id: XM_039792773.1


Basic Information

Item Value
RNA id XM_039792773.1
length 2185
RNA type mRNA
GC content 0.49
exon number 10
gene id LOC120554137
representative False

Chromosome Information

Item Value
chromosome id NC_053135.1
NCBI id CM020932.1
chromosome length 21835524
location 11253646 ~ 11260652 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

GattgaatgagagagagagttgaCAGCGACAGAGAGCGTTTTCGGCTAGAGAGTCACTTGATAGATGTAATGGATAGGCTACAGGTGATCTGCAGGGATGCAGGTACCTTCGTCGCTCATCTGTTCAGTTCCTGGGTTTCTCCTCGCGGTTACAAACGGCAACATGTCTAAACCGAGAGACTACAGCAGCCAGTCCTACTCCCCGGGCAGCACGGGACCGCTCAAAAGCAACCCGAGTCAAAACGGGATCGACCCGTCGGGCAAATCCAGGGAAAAGGACGACATGGTTGGACTCAATGACAAGTTCGTCAGGTTGATTGACAAGATGAAACACCTGGAGGATGAGAACAAAAAGCTCGACACGAAGCTGAAGATCCTCAAGGAGCAGGAGGACTACGAGGGGAAAATCGACGACACGGTCAAGCAGCTGGAGAACGAGCTGGAGCAGCAGATTGAGAACTTGCTCCACGACCAAGAAAAACTGCATGCTGCACTGCTCAAGAACCAGGAGGAGGTGCAGGACACCAAGAAGAGgTATGAGGAggaatatttgaaaaaaactgaCCTGGAGAATGAGTTTATTGTCAAGAAACAGGATGTAGATGAAGGTCAATTGGAGGCAGTAGATCTGGTTCTGGAGCTGGAGGACCTGATTGGAAAACTGGAGTTCCTCAGGATTGGCTATGACGAGGAGCTCAAGGAGCTGGAGTCGCACGTCCAGAATGCGACAGTGGTCTTACGTGACAACAGCAAACGGTCTCTGGACATGGACGAGATCATCGAGAATGTCAAGAATCAGTATGCCAACATGGCTGCCCGCAGCAGGGACGAAGCCGAGCACTGGAACCAGAAAAAGATGGATGCCATGGTCTCAAATGCAGGACAGCGTGAGCAGGAAGTGCGTGATTTAAGGAGGGAGATCTCAGACCTGGTGCGCCACATCCAGAGGCTCAACGGGGACCTGGAAGCTCTCAAAAGGAAGgaaGAGTCCCTGAACAAGGACATCAGTGACGCGAGGACAGAAGGCGAAGACAACCTGCTGAAGGCTCGGGACGACATTTCCCAGCTGGAGGATGCCTTGAGACGGGCCAAGCAGGACTTGGCGGGACAGATCCGCGAACACCAAGCGCTGATGAACCTCAAGTTGGCCCTGGACATCGAGATCGCCACCTACCGCAAGCTGCTGGAGGGCGAGGAGCAGAGAATGAACTACCATATGCGCCACGCAGACGTTCACTTGCCAAAGAAGCACCTCCTGCCAGAGAAGCACCTCCTGCCAGAGAAGCACCTCCTGCCAAAGAAGCACCTCCTGCCAGAGAAGCACCTCCTGCCAGAGAAGCACCTCCTGCCAGAGAAGCACCTCCCACCAGAGAAGCCACAAGCCCCAGCACCCACAGTCGTCCCGGTAGATACAGCTGTCCCGGCGGTGTACCCCGCCTTGAAGAAACGCCTGCTGATCCGGGTGGAGGTGGAGGCGGGCAGAGTCGTGTCCGAAAGCTCCCTTTATACTGAAGACTGACCGGCACTGTCCATCACACCTCTGTCTGCAGCATTAAATGAAATATATCCGCAAAATGTGaataacaaatatttaaattaagTAAAATTTGGAAGGATCGTCATGAAAGTGTATTTAAATGCAATAATCATGTTTAGTTTGTGTGCTTTCTGCAGtctaataacaataacaatagcTTCTTGGCAGGTCGAACGTCATTTTTCTAGAACTCGTGCTTAAAGTTGGAGACAGTTTGTTTATGTCGAGCAgtgctttttaaaaaagggtTTTCTTATCTTTCTTTGCCTTGGCGAAGACTTGTGTTCCTGGTACTATCGGTGTATTTGTTTCAGCTTTCTTGCAGTTGTTTCTCTCATAGCTTTTTGAGCTTAATAAGATTTTGTCTCTGTAGAAAAAGAAACTGTGTAAAGGTTTCTTAAtgatgtgaaaaataaaatgaggaaCTGTTCTGATGCACAACATCTTGTTAATATCGGGAAGGATATTCACAAAGATAACGCTTCCTACACGAGGTCACATTAACGGGAGGCATACATGGATCTGGGGTAGAACTGAATGCTTGAAATGGCTTTTCATACTGCTTTGGAAttgttctctttctctcacatgTATCTGCACCTTTAGAACTCAAATAGGCTATAAATAAACAAAGCACCATGAACAATA

Function

GO:

id name namespace
GO:0045095 keratin filament cellular_component
GO:0005198 structural molecule activity molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU317815 lncRNA downstream 101095 11151842 ~ 11152551 (-) True G234032
TU317810 lncRNA downstream 114458 11136627 ~ 11139188 (-) True LOC120554131
TU317807 lncRNA downstream 159464 11041186 ~ 11094182 (-) True G234024
TU317809 lncRNA downstream 170478 11060811 ~ 11083168 (-) True G234026
XR_005638320.1 lncRNA downstream 206710 11039109 ~ 11046936 (-) False LOC120554127
TU317841 lncRNA upstream 24174 11284792 ~ 11285090 (-) True G234051
TU317856 lncRNA upstream 44993 11305611 ~ 11306703 (-) True G234063
TU317874 lncRNA upstream 71663 11332281 ~ 11332560 (-) True G234078
TU317876 lncRNA upstream 72749 11333367 ~ 11334089 (-) True G234080
TU317961 lncRNA upstream 75992 11336610 ~ 11341839 (-) True G234152
XM_039792770.1 mRNA downstream 21262 11230221 ~ 11232384 (-) True LOC120554135
XM_039792765.1 mRNA downstream 32660 11154926 ~ 11220986 (-) False LOC120554133
XM_039792780.1 mRNA upstream 4938 11265556 ~ 11274982 (-) True arpc2
XM_039792783.1 mRNA upstream 46143 11306761 ~ 11314144 (-) True LOC120554144
XM_039792781.1 mRNA upstream 54064 11314682 ~ 11323086 (-) True LOC120554143
XM_039792850.1 mRNA upstream 110335 11370953 ~ 11387252 (-) True LOC120554162
XM_039792851.1 mRNA upstream 110335 11370953 ~ 11382239 (-) False LOC120554162
TU317805 other downstream 206687 11040007 ~ 11046959 (-) False LOC120554127
TU317684 other downstream 284536 10967423 ~ 10969110 (-) True G233954
TU317688 other downstream 295014 10948468 ~ 10958632 (-) False G233954
XR_005638322.1 other upstream 129386 11390004 ~ 11441926 (-) False spega
TU318109 other upstream 1027302 12287920 ~ 12293143 (-) False G234253
TU318311 other upstream 1692472 12953090 ~ 12954125 (-) True G234405
unassigned_transcript_1566 other upstream 1725199 12985817 ~ 12985888 (-) True trnae-uuc_66
unassigned_transcript_1567 other upstream 1795998 13056616 ~ 13056687 (-) True trnad-guc_30

Expression Profile