RNA id: XM_039792790.1


Basic Information

Item Value
RNA id XM_039792790.1
length 8921
RNA type mRNA
GC content 0.53
exon number 36
gene id spega
representative False

Chromosome Information

Item Value
chromosome id NC_053135.1
NCBI id CM020932.1
chromosome length 21835524
location 11388552 ~ 11441926 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

CTCCAGTCCGTGAAGACGTTCGAGAGAAATCAAGATGGCAGAAGGCCCCGGATCCAGTCCCAGTCTCAACATCCCTTCCAAGAGGCCCAAAGTCACCAAGGACCAGATTGTTCCAGACGCTGAGGTTGCAATGCAAGAACCCACGGCGCCAGTTTTCACCCGCAAGCTCCGCAAAGCAGCCGTAGGAACAAGTTGTGATATCCGGCTGAGGGTGTCAGTGGCAGGATTTCCAAAACCTCTGCTGACTTGGTACCACAACGATGAGCTCCTCCCAGCGTCAGAAGCCCAGGGCTCAGGCGGGCTGTGGATACGGGACTGCCGCACGAGCGACGCTGGCTTGTACACTTGCGTGGCGACCAACGAGCTGGGGGAGGCAAGCTGCAGTGCCGTCTTGGCCATTATGGACCTTGGTGAAgACTCTGAGAACACAGAGGATGAGACCACAGAACCTCAGATGGAAACCAAAGAAGGGCCCGGGAGGCACCAAGACAAGGCTGGACGGAGAGGACCTTCAGTTGAGGGAGGCGGGATGATGGACTATAACCCAGACGCTTCAGATCGCAGAGCCACCCTACCTGGCGCCTATGACCCTGTAGTGGAGCGAGAGCTCCGCGCTCTGGGCTCCCGCCCTCCAGGGCCCCACTTGGACCCAAACCCTGCCAGGAGTCAAACTGCTGACAGATCACAGGGCCTCTCCTCCCCTGTCCCCCTGTCTTCTCCCCAGCCACCTCTCAGTTCGCAAAATAACAACCTCCGTACCCAAGACCAAGACCCAGATAAAACCAAACCGTCGGATCCCCAATCATCGAAGACCGACCAGGCATCAAGTGTCAACAGTGTTGTCATGACACCCAAACTGGCTCGTGCTGGGCCCAAGATCTTTGACAAGGTCTGTGCTTTTGAGGAGCGAAGGGCTAGTGTGGATCTGCCAGGGGGAGTCAGAGCTGGATCAGGATCTCGATTTGGAGGAGCAGCTTCCTCAGACGACAGCGGGAAGAAGACAGGAGGCCCCAGCGAAGGGGAGGACCGAATCCTGCAGGGCGCAGCCCAGAAGCGAGTACTGTTCAAGCAACGGGCCTCTTCTTTGGAGGACAAGACAAGCTACTCCCAGATGGTCCAGAGCTACCAGAGCAAGTTTGCCGAAGAGCTCCAGAGGATCAAGAAACTTGTGGGGAAACCAAGCCTGAAAAAGGCGTATTCCACTGAGCAGCTGTCGCAGAAAGAGAGGCTGACCACGGGCAAAATAGAGCCCATTCCTCCCCAAGTGGTTAAAAAGTTGGAGGCAAGGGAGCGAGCCCTGGAGGACAAAAAAGCTGGGGAGAGGGAAGGGGACAGCAGATTGCAGATTTCTCCACAGGCCCAAGGCAAAGGTCTGGGGAATGAAAGGAAGGTCCCTGAAAAGATGACACAGCCAGATTCACAGGGGAAACCAGTGGATAGCTCATCACGAGGAAGCACAGGGAAAGTCTCTGTTACCATGGAGACGGCACCAGTTCACCAGTTACCAGGGCAACCATTGCCAACAGCCACAAGGACAAGACTCGCCAGGGAAACCCGACAAAGCTCTCCGGCAGCTGACAAAAACGCACTTGTTGCCGTGTCTCAAAAATTCTCATCCCCCACCGGAGATCTGGGGATGGATTCAAACAGGGAGACAAAGATGGACAAGGAAGCAGATCATAGATCACCAAGCCCGAGTGGGAAGAGAGCATCCCCAATAACCATGAGGGAACCAGGGTCCCAGTTCCCATCCAAGCCCCCCAGGCTCACCCCATCACCCACTCCTTCCGTCAGCCCTCTCCTAAAAAGGAGGAAGGCGGAAGCGGGGCGGACGCCTCCGACCTTGAAAGTCAACATCCCCACCATCCTGGTGGAAGGTGAACCCATGGAGACAGAATGTGCTGCAGGCAGGAGCAACGAGAGAAGCAAGAccagaaagaaagaggggaaaGTTCGCAAGAGCAAGCAAGGCCGTTCTGTTCAACCCAAGTCTCCAGAGGAagGGGGCTCATCTGATGACTCGTACCTGTCTGCTGATGAGGATCCAGCTGAGGGCCCAAGGTTTGAGAGGGCTCTTGTGGACACCAAGGGACCCAGCGGCTCTGAGATCACACTGACATGCATCATCACAGGGAGTCCGTCCCCTACAGTGACGTGGAGGAAGAATAACGTGGAGATACGAAGCGATGCCTTCCACGTGGTTAGGGCTGAGGGTGAGAGGCACAGTCTGGTGATAAAGCAGTTGAGGCCGAACAACGCAGGGTCGTACTGCGTCACAGCTGTCAACACAGCGGGCAGAGCGTCCTGCAGCGCTACGCTCTTTATCCAATCAGagCCAACCCACATGCAATGTGGGAAACCAGCCAGGGCCTTTGAAGTCAGTAGTCCGACCCAGCCAGATGAGGAGGACTTGAGCCCTCAGGAGGAGGCGATGGAGCTCGGGGACTTGCCTGCTCCGAGTAAAAGAGTCCACTTCAAAGAACCTCCCTCATTTCAGGTGGCACCATGGGACCAGGAGGTAACTCACGGTCAAGATGTCGTTATCTCAGCGAAGGTGGAGGGGCAGCCCAAACCCATGGTTTACTGGTTGAAGGACAGAGTCCCGGTGAAGACAGCGGGGCGCTTCGCCGTGCGAGAGACAGACGACGGCACCAGCGAAATGAAAATCAGCTCAGCTCAGAGGTCAGACGCAGGGCTTTACGTCTGCAAGATCGCCAACAAGTACGGATCCGAGCAAGCGGAGTGCAGAGTGGTGGTCAGAGAGTCTGCAGCACAAACCACACTGAAAATCACCAGGCAGGTAAAAGATGTGGCGGTGAGGGCTGGAGAGTCGGCCATGTTCGAGTGTCACATTACGGGACCTCTAGACGTGGACGTGGACTGGCTCTCGAACGGGAAGCTGATCCAGCCAGCGCTGCTCAACTGCAAAATGCACTTTGATGGCAAGAGGTGCCGTCTGCTGCTAAATTCAGTACACGAGGATGATAGTGGAACATACACTTGCAAGCTGAGCACTGCCAAAGAGGAGTTGACCTCAAACGCAAACCTGAGGGTGGCCCCATCCAAGGAGCCTCTGTTCACCCGTAAGCTGGACATCCTGGAAGTCATCGAAGGCCGCACTGCCCGGTTTGACTGTAAAGTGAGCGGATCACCTGCTCCTCGAGTCACTTGGATGCATTTCGACACAAGAGTGGAGGAGAGCGATAACGTTTGCATCCTTCAAGAGGGGGGTCGTCACTCGCTTGTCATCACCCATGTTAGCAGCGACACAGAAGGCTTCTACACAGCAATCGCTCAAAACATTCACGGGAAGTCTGAATGCACCGCCGAGCTCTACATGCAAGAACCTCGCGCTGCCATCTTGCCTCACATgGCCAAGTTGGAGAAGATGCCATCCATCCCCGAGGAGCCTGAGGTGCTGGAGAGTGAGGTGGAAAAGAGGACCATGCCAGACTTCGTCAAACCTCTGGCTGATGTGGACGTGACTGAAGGCAAAGAGGCTCTGCTGAAATGCAAGGTGGCGGGCCTGCCCTACCCAACCATCGCCTGGTACCACAACGGCAAGCGCATCGAGAGCAGCGAAGCACGCAAAATGTCCCAGCACAGGGATGTCCACAGTATGGTCATTCGGAGCGCTTGTCACGCTCATGGGGGCGTCTACAAGGCCGTCATCTCCAATAAATTGGGCAAAGCAGCCTGCTATGCACATCTTTACGTCACAGaTATTGTTCCTGAACCCCCTGATGGTCCTCCAGTGATTGAGGCCATCACAGGGAAAACTATAAGCCTCAGCTGGAAAAGACCAAAGAGGGTTGACTCTTCATTTGatgccGACTCCTTGCTATACGTGGTCCAGCAGCAGCCTCTGGGCTCCATCCAGTGGTCTGTCGTGGCGTCTAACCTGAGGGAGACCAAGTACACCGTCACCTCCCTGTCCAAAGGAGTTCGCTACGCTTTCAGAGTCCTGACGTCCACTGGGAAGACTTTAAGCAAACCGTCACCCTCTACTGACCTGGTCCAGCTGCTGGACAGGGGACCCTATTTGAGGAAGGCCCCAGTCATTTTGGACAAACCTGACATTGTTTATGTGGTTGAGAACCAACCTGCGAGCATCACCATCACGCTGAACCATGTGCACGCAGTTGTCACCTGGAAAAGGAGGGGGGTGGCGTTGGTCAACAGACTGGGGATGTATGAGCTGAGCATGCCAGACGACGATCAACACACCCTGAAGCTTCAGCGAGTCAGGAGTGCAGACATCGGTCAGCTAGTGGTCACGGCCAGCAACCAGTTTGGCAGCGACCTCTGCACGCCTCAGCTGGCTATGGCAGTGCCTCCTAAATTTGAAACCATCATGGAGGATGTGGATGTGCACATTGGGGAGACGTCCCGTCTGGCTGTTGTGGTTGAAGGCAAACCAGACCCAGATATTCTGTGGTATAAGGATGATGTGCTTCTCTCTGAGAGCAGCCACTTCACCTTTGTGTACGACGACCCAGAATATTCCCTCGTTGTCCTCAACGCCCGCCCCGAACACTCCGGCGTGTACACCTGCACTGCAAAGAACCTGGCCGGCTCCAACTCCTGCAAAGCTGAACTCACAGTTCATACAGAGCGAAAAGAAGCAGCAGAGCCAATGGAGGATGAAGGAACCATTCTGAGGAAAATGAGGCGTTTGACGGATTACTATGATATCCACAAAGAGATAGggagGGGTACCTTCTCCTATGTGAAGAGGGTGATTCAGAAAAAGGGAAAGGCTGAGTTCGCTGCCAAGTTCATTTCTGcgggaggaaggaggaaagcCTTGGCCCTCCGAGAGATGGAGCTGCTGTCTGAGCTGGACAACGAGAGGATTCTCTATTTCCATGATGCCTTTGAGAAGAAGAGTGTGGTAGTGCTCATCACAGAGTTATGTCACGAGGACTTGCTGGAAAGAAtggccaaaaaaacaacagtcaaggaactggagATCCGCTGTAGTGTTCAGCAGGTTTTGGAAGGTCTTCGTTATCTTCACCAAAAAAACATAGCTCACCTGGACATAAAGCCAGAAAATATTTTAATGGCAAGTCCCGGGAGTGACCAGATCCGCATTTGTGACTTTGGTAATGCCATGAAATTGGATACTTCCGAGGAGTGCTACTGTAAATACGGCACGCCAGAATTTGTTGCACCAGAGATTGTTAACCAAACTCCCGTCTCCACGGCAACAGACATATGGCCTGCTGGTGTCATCACGTACCTCTGcctgACTGGTGTGTCTCCCTTTGCTGGTGAAAATGACAGAGCTACTGCCTTAAACATCCGTAACTACAATGTGGCGTTCGAAGAGGGCATGTTCACTGACCTCTGCAAAGAAGCAAAGGGATTTGTCATCAAGCTTTTGGTAGCGGACCGACTGAGGCCCAGTGCCGTTGAGTGCCTTCGTCATCCTTGGTTCAAGTCACCAACGAACAAGAGCATCAGCACAGCGATGCTAAAGCAAGTTTTGTCTAGAAGGCGATGGCAGCGTTCTCTTATCAGCTACAAATCCAAGATGGTGATGCGGTCGATCCCAGAGCTTTTGAATGACTCATCCAACCACGTCTCCATCGCTGTGGCCCGGCATTTAAAAGAAGGCTCCCCAccaccctcctcttcctctgactcCGACGCGGATGTGGACGAGCTTCCCTTCATCCCTATGCCGCTGTCCATGGTCTTTTCGGGTTCCAGGGTCTCCCTTAACGAGATCCCGGGGGACGAAGATGCCACTGGATGGCCCAGTGTCGCTGCTCATGGGACGAAGAAAAAGGACAACATGGAGGTAGGCACGAGAGGAGGGGCAAATAAAAGTGCAAAAGATGAAGCGGAAACCCCAGATGACGAGAAAATGGAAAATACACAACGAGCTCCTCTAAAAAAAGGATCAAGTGTGGAGTCGGAAGAATCCCAGACGAAATCCAGGCGGGCTACCATGAGGAGAGGCAGCTCTGCTGATTCAGCACTGCTTCTCCACATTGACCCAGAAGAGGGAAATGCAAACAAGGACTCAGAAGCAAGTAACAAGAGCCTGAAAAAGGCTGTTTCTATGGAACTACCCAATCGCAGCCCGAGCCCCGGGGCGGCGAAGTTAAGCCAGGAGGATTATGCCCTAAAACTGGAACTGATGAGACAGCGGTTGCTAAGGGGAGGAAATGTGGACAAAAAGATGAGCGGCCTGCGAGGGCCCTTGTTTGAAACCCTCGGCATGGAAGATGAGAGGCGGACAGGGTCTCTTGATCGGAACTTGAGGAGATCCAGAGCGGGGCCATCAACTCTCACCAGAGCGGCGTCTTCAGAGAGCCCTACAGAGGACACGCCAAAGACCAAAGTTTTTCGTAAAAGCGCCTCCTTCACTCAGGGGGATTCTGAGCCCATGCCCCTGCACCGCAGGTTTGGAGCCCCCTTAGAGATCCCATCGATGGGCAACGGTAGCATAGAAGGAAAGAAGCTCCAGGAGGCAACCTCAATGTCCGCACTCACAGAACAAACAACACTGGAGTCTATATCTGCCTCACCTACAAAAAAGATTTCGGCTACACTCCCAACACCAGGAGGATTGGACCAAcagcaaaaacagaacaatGTGAAAGAACATAAGGATATGCAAAGTATGAATGAGAAGAACATGGATGGGATAACAGAGAAAAGGACCAAAACCCAGTTAGAAAAGCCAGGCCCAGTAGAATCTGAGTCTAGCTCACCCTCTGTAATTACTCCTATAATTGTAATAGAGGAggatgatgaagaagaagaagagagtaaAGGAAGGGAAGAAGATGAGCTACATATTAATGAAAAGGATATGAAGGGAGATGACACACAAAATGGTAAAGCTGTTGCAGCGCAATCTGTAACATCTGACAAGGCCCAATCCGAGCATCCGGCCACACCACATGATACAAAGTCCACAGAAATCCCCACATTGCCGGAACATCCAGCAGTGTTTGCTAAAGTAGCAACTGCTGAGCGATCTCCTAGCTCTGTTTCCACATCATCGAACCCCGATCTCGCTGCCATCCCCCGTCGGCCTACGCTCAGAACGGACATCAAAGACATTGACTCGGAGGAGGTCTTTGAAGCCAGGTTTAAGAAGCGGGAGTCGTCTTTGACCCGTGGCCTCCGAAAACTGACCAGAAACAAATCGGAGGAGAAATCCCCCGTACTAAACCGGAAGGTGGGCGAGGGAGGTGAAGAGGTTTATAGGCCGGGGCCAAGGGGGGCACCTcttgaaatggtaccaaaaggACTACAGGAGAAATCCAAATCTGTTCAAGATTTAcgagaagaagagaaggaaaCAGGCTTCGGCCTCATTGGGAGGTTTTCCTTGCGGGCCAAGAGGTCAACATCCGTTGATAAGAAGGGGGAGAAGTCAAAGGAGGAAAAGCACCAGGATGTGCAGGAAACTGCTGGAAGCAAGAGGGTTTCATGGATTATTGGGCGCAGTAAGTCCCTGGATACAAAGGAGCTGAACAGTGCAGGGGCACAGGGGCAGCCGGATGAGCGAGAACAAAGAAAAGCTGAGGAGTCATCGGTTTCTGCTATGAGGCGCAAGTTTGAGTCCAAAGTGGCAGGAATCTCTGCCAAAATAAGGACCCagtcagaggagaggaaggacaAAGAAGCTGGGGGGAGTCAGAAAGAGCTGGTGCAAAATGATTTGAAGAAAGCCACTGATTCCCCTGTCCTGGCAATGCGACGGAAGTTTGAGAAAAAAGTGGCAGGAATTTCCTCGAAAATCCGCAGCCAGtctgaggagagaaaagaggatgAAGAGGGAAAGAGGACACCCCTGTTTACCCGCCATCGTCATTCCCAATCTGAGGGGCGAGGACTCAAAGGAATGGGCATCCCCGAGAATCAACTAGCAAAACAGGCCGGCGCTGCTGCGTCCAAGGAATCGATTGAATCCGCTTCTAGCATCCATTCCGAAAAAGCCTCAGAAACTGACAGGCGATCACGGTGGGACAGGTGGGGTTTGACAAGGGGCAAGAAAGACAAAACCTCGTCTCAATCTGATCTGCCTTCATCCGTCCCCAAAGAGGATGGTTTGTCAAAAAGCCAGCAGTTCATCCGTTCCGCTTCGGATTTTGCCCCCGTGTTCCACATCAAACTGAAAGACTGCATCTTATTGGAGGGGGAACCTGTCACGCTTAGCTGCCTTCCAGCTGGAAGCCCACATCCAGAAATCACATGGACGATAGATCGGAAACCGCTGCAGGTGGATGACAGAATCAACCTGAGGTCCCACCCAGATGGCAGGCAGCTTCTTATGATCACCAAGTCCAGCCGAAGGGACGCTGGAGTTTACGAATGTGTTGCTACCAACCCTATAGCTACCATCACCACCTCCTGCACGTTGTCAATAGCTTATGTCCCAAAACAGCCAGGGACCCCTGAAGTCCCCCAAACTTACAACAACACAGCCCTGGTGCTCTGGAAGCCAGCAGACACCAAGTCCCCGTGCAGCTACACCctggaaagaaaaacagaagGGGATTCTAACTGGCTGACTGTGGCCACCGGAGTTGTCGACTGCTACTACAACGTCACAGACCTGCCACCCGGCAGGTCCTTTAGATTCCGCGTCGCCTGCGTCAACAAGGCAGGACAGGGGCCGTACAGCAACTGCTCTGCTCCAGTCAGCCTGGACTCAACAGggGTCGTTTTGGAGTCATCCGAGAGTGCCGTGAGAACGCGACGGGCAAAATCTACATGGCAAAGATCATTTCCTACAGCCAGGAGAACAAGCAGGAAGTGCTGAAGGAATACGAGATCCTGAAATCCCTTCACAATGAAAAGGTCATGTCTCTGCACGAAGCCTACGTCACGCCGCGCTACCTGGTGCTCGTGGCCGAGTACTGCACCGGCAAAGAGCTGCTGTACAGCCTCAT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU317968 lncRNA downstream 47794 11343961 ~ 11345876 (-) True G234153
TU317961 lncRNA downstream 51831 11336610 ~ 11341839 (-) True G234152
TU317876 lncRNA downstream 59581 11333367 ~ 11334089 (-) True G234080
TU317874 lncRNA downstream 61110 11332281 ~ 11332560 (-) True G234078
TU317856 lncRNA downstream 86967 11305611 ~ 11306703 (-) True G234063
TU317975 lncRNA upstream 17011 11458937 ~ 11489477 (-) False LOC120554153
TU317991 lncRNA upstream 82519 11524445 ~ 11526302 (-) False igfbp5a
XR_005638326.1 lncRNA upstream 177908 11619834 ~ 11620856 (-) True LOC120554171
XR_005638325.1 lncRNA upstream 178943 11620869 ~ 11621353 (-) True LOC120554169
TU318011 lncRNA upstream 242696 11684622 ~ 11685167 (-) True G234181
XM_039792850.1 mRNA downstream 6418 11370953 ~ 11387252 (-) True LOC120554162
XM_039792851.1 mRNA downstream 11431 11370953 ~ 11382239 (-) False LOC120554162
XM_039792781.1 mRNA downstream 70584 11314682 ~ 11323086 (-) True LOC120554143
XM_039792783.1 mRNA downstream 79526 11306761 ~ 11314144 (-) True LOC120554144
XM_039792780.1 mRNA downstream 118688 11265556 ~ 11274982 (-) True arpc2
XM_039792836.1 mRNA upstream 17480 11459406 ~ 11467501 (-) True LOC120554153
XM_039792837.1 mRNA upstream 17480 11459406 ~ 11467260 (-) False LOC120554153
XM_039792832.1 mRNA upstream 28525 11470451 ~ 11502481 (-) False LOC120554150
XM_039792831.1 mRNA upstream 28525 11470451 ~ 11502481 (-) True LOC120554150
XM_039792847.1 mRNA upstream 82456 11524382 ~ 11538321 (-) True igfbp5a
TU317805 other downstream 346711 11040007 ~ 11046959 (-) False LOC120554127
TU317684 other downstream 424560 10967423 ~ 10969110 (-) True G233954
TU317688 other downstream 435038 10948468 ~ 10958632 (-) False G233954
TU318109 other upstream 845994 12287920 ~ 12293143 (-) False G234253
TU318311 other upstream 1511164 12953090 ~ 12954125 (-) True G234405
unassigned_transcript_1566 other upstream 1543891 12985817 ~ 12985888 (-) True trnae-uuc_66
unassigned_transcript_1567 other upstream 1614690 13056616 ~ 13056687 (-) True trnad-guc_30
unassigned_transcript_1568 other upstream 1670232 13112158 ~ 13112228 (-) True trnag-gcc_27

Expression Profile