RNA id: XM_039792831.1


Basic Information

Item Value
RNA id XM_039792831.1
length 5050
RNA type mRNA
GC content 0.51
exon number 26
gene id LOC120554150
representative True

Chromosome Information

Item Value
chromosome id NC_053135.1
NCBI id CM020932.1
chromosome length 21835524
location 11470451 ~ 11502481 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

TTAGGCAAGTTGTCATGTGATGAAAATATGTCAACATCACCGTGCACTGTAGTGTATTATGAAACCAGCAAATTACTACTGAAACGTCGTTTTTATTCATGTATAAACATGAGCAACTTGTAGTACTGCTCTCTCGAAGTCAAATTTTATGTTAGCTATCCATTTTTTGGCTGTCACTGCACAGGATGGCTTCACCTCAGAGTGGCCAGTCCTCCCTTGTACACAGCTTGGCCACGCTCCTCCGAAATGATGGCGACTTGGTGCTGGACGGCAGCAGCACTCTGACCTTGCCGGCGGCCAGCTTGCAGCAGCTCATCAGGCTGTTTGAACAGTACTTGTTGTCCAGGAGCCAGCAGCATGGGTTCCTTGCGCTGCCCTCCCACCCTGCTGACACTGCTTCCCTGCTACAGCTGCAGTTCCTGTTTGACGTCCTGCAGAAAACCATCTCCCTTAAACTCATCAACCCATCAGGGGTGAGACTTCAGTCCGTAGTGAAAATCTTCCCATTCAAGTCTTTGAAGTGCTTGGAGCTGAAGAGAATCCCTCCACACTGTCTCGAGGGACTTAGAGGAATTTACTCCCAGTTAGAGGTCTTTACATGTTCAAAGGGCCTCAGCTCCCTGGAGgagcTGCTTTCCCTGTGTGGAGGTGACCTGAGCTCTGCACTGCCTTGGCTGGAACTGCACACGCTCAACTTTAGCTACAACTCCATTGTTTGCCTTGACCAGTCACTAAGTTTACTGAACGTCCTGAAGTTCTTAGATTTAAGCCATAACAAGATTCAGGAGTGTGCTGAATTTCTAAAGCCCTTGAGTGAACTGGAACACTTAAACCTGGGCTACAACTGCCTGCAGAGGGCGCCAACGCTGGGCATGAGTGCCAGGGCCAAACTCCTCACACTTATCCTCAGGAACAATGAACTGGAGGCTATTAACGGTGTGGAGCACTTGTCTTCACTCCAGGAATTAGACCTTGCCTACAACCTCCTGTTGGAGCACTCCCAGCTGGCTCCTCTCTCCCTGCTGCACTGCCTCAACACACTTAACCTGGAGGGCAACCCGCTGTACTTCCAGAAGACCCACCGCACCTGCACCGTCCGACATCTCTCCCCAAAGGCTGCGAACCTTAGACTCAAACTTGATGGTACCCCGCTGTCCTCATCTGAGTTATCAGTTCTTCCAAAACCAGGCAGGCTGATCGTCCAGGTACAGACTGCACCTCCAGTTGCCATGCCACCAGAACGGAGTAACCAAGATGTGTCTAGTGGTGCTGGGGAGCTTAGTGACAGCCAGTCAGTTGGAGAAGTGGCAGTCTCACACATTCGGAAGAAGAAATCCAGGAGTAAGGTGAAAGTGCGGAGGGCCAGTATATCCGAGCCCAGCGATACAGACTACGAGCCCAGACTGCTTTCCTCCTCACAGAGCATCGTCCTCCCCCACCAGCAGGAGATTGAGCGCATGTCCAGCTTCAGAGACCAGCTGGGCGAGGATTGGCTGAGATACCAACATCATCTAGATGATTCCTCCTCTACCATCACCGCCGCTGTCAACACCAACCCGCCGCCTCCTCGCTCCcaacccctccccctccccaacGGCCTTAACGCCACCGCATGTCCATCCACTAGCCCTGGGCGGCAGGCGGCTCCATCGTCCCTGGACGTCCCAGAGGTCCTCCCCGCATCGTTGATCTCGTCCGAGCCAGGATTAGAGACATCCATGGATGCAGACCTGGAAATGGAGTCTACCCTACGGTGGCCCGGTCAGAGCTCACGGTCCACCTTGGAGGACAGCGCGGTGGACGGCGTGGTGGCGAGTCGAGGAGTGGCGAGCTTACCAGGAGCGAGTCCCGAGTCCCGGGGTTCGGCTAGAGGGGAGAGCGGAGACAccaaggaggaagaagaagaggaggaggaggatctgGGAGTGGACTTGTGTCACCCCCTACTTGTGGGTGTCTTATCtgacaaagaggaagaagatggCGAAGGCcagggggagaggaggatgaggagaaggaggagaagggaaGAGGTGTTCCTGCGCATCAAACAGGGCCTGGCGCTGGAGGTGGACATGCAGAGCGGGCGGGAGAGATGCCGCCTGGAGCTACGCAGCCTGGTTGGGGTGGAGACCACAGAGGCTGCCTGGACCCGAGGGgagacagaagagATGCTTCCGGCTGTGGAGCTTCAGTTCGAATACATCAGctgggagaagaggaggagacgCTACGTCATGCTTGATGATGAGCCGCAGCAGGCATTGCAGGCTCTGACTGACGTGCTGACAAGTGTGGCGGAGGAAAACCAGCAACGTGACTCTGTGCTCCGGCCCAGCTGTGTTCGCCTGCAGTGCCTTCGCTGCAGGTCAGAGTTCACGCTGAagggagaagggagggaggaggaggaggccagGGGGAGAGCGAGGAGGAGAGGGGCTGCCATGCTACCAGAGGGTGCGGAAGAACAGGATCAGGAGGCGTTTGCGGAGTTTGATGATGACAGCAAAGgaaacagTAACATTTGTCCAGAATGTGGTAGCGATCATGTGGTCCAGCTGGCTGGCCAATCAACTCCCTACAGCAGTACGCCCATCAAGCGCTCACCAAGGCCGGAGAGTGGGGACGATCATCTCGATATAAACCAGAGTGCAAATAAGGATGATTACACAGATGGCAGTGTTAGCAGTAGTCCTGTCCTCGGAGCTGCCACCACTACAGAAGACACCGCCTTCGTCACTGCCCAGGGAAGCTCCTTCTTCATCGGGGATGGTCAGGGTGATACGTCCAGTCTCTCCTACAAATCAGAGTGCCAAAGTAAAGAGGATCTGGCTGGGAGCTACCATTACATTGCTACCGGTGCCACACCACCTGAAGTCAAAGCCCAACCTGCAGGAAGATCCGCCCACAATGATGAGTTGGACCTACTGTCTGAGGACTACGAGGCGGTGGACCATCGGTTGCAGCTTTTCCTGGATGTGGACGTCttcgaggaggaggaagagcttCACTCTTTCCTCAAAATGTCAGCTGTCAAATTTGGGGAGCCAGGGCAAGTTCCCTCTCTGTTGGTGGTGTCAAACCAGCGGATCTATTTCTTGGAAATGACATCAGAAACCCACAGAGGccagctctctgattggctgcagaaGAGGGACAGCCACCCAATCGTGGAGCTCAGCTACCTGGAGGTGGGACTGGGCTCTCAGAGCATCCACATGGAGTTTGGAGACGGGGAAATGGCCTACACCCTCCTCGTGAGGGACAGTTTACGCTGCAAGCGCTTCTTTGGCCTTTTGACAGGAATTGTGCGTGAGATGGCGCACAAATCCGAGAGCAAGCTGCAGTCCATCTCTACCACAAGACTCAACCCTCTGCACCATCTCTGGCCTCTAGTGTGTGAAGACATCCAGGCAGATGTGGAGGATGGCCAGCTGCAGTTTTTCTACATTCTGGCTTTTGTTCGGCAAGAGGATATTTGGACACCGCTGACAGTCCTGGCTACCCGGGAAACCCTGTACCTGCTCAAAGAGGATCACCAGTGGAGGAAAAGCTCAAACAGCCCGACAGTGACTGAAAACAAAGAGCCGAGCAGCGGGAGCGTTACCATTTTGGAAACGCTGCCAATGAGCTGCGTGAGCTCGGTCCACCTGTGGCCTTCAGACCAGTGCAGGATGGATATTAAGCTTTACGACGAGACGGTGAAACAGGAGAAGACGTGGTGTGTGCGCTCCGAGAGTACTGAGCTCCTCCAGGGTCTGCTGGCCTGGGTCAGAGCACAGTGGGAGGCCATGTTCGGAGTAAAACTGCACACAAGCCTGCAAGACAAAGCAACATAATAGggggaggagaaaaagaagaagaaaaaaactagttacagtctgtgtgttttgtgagcaTGAATTGTTGGTACTGGGAAATGTTTAGTGAGCGTGAGCgagtttgtctttattttctctctgcACAGTCTGCACTCAGTCTGGTCCCATTACGCTCGTAGCTTTCATCGTCTTTTTAAAACTTGGAAATGATTGCACTCATTCATGTGGTACACAAGCCTGTAAAAGCACTGGTTGCATAATTCTTTATTCTCCAGATACCATCCATCATGTCTACAGCTGAAATGGAGGGTTCCTTGTTTCTTTCACAGCAGCCATGCTTTCCTGTTGAAATGCACCTTATTGCATTCCGTAGCGTTCTGCGATCAAGATGACACAAAAATGTGGGTTTTGGGAACTAAGAGGGCATTAGGTTGGGGTTGTTAGCTAAGCCTTAAAATATGTCCACCCCCCCCTTATTAAGCTGGACAGAGTCATTCCTGGCTGTCTTAGGGTGCAGTGTTTTGTGACATCACATGCTCAACATAAGGCTGGAGGTGCTTCTGAAAGGCCAAGGCTCAATACCGTGTCATGGAGGGTCACCTCACACCCCCAATTAGGGTCTTATGATGTTGCTCTGCACTTATGTGAGCAGAAAAAGGATACCAGAAGCGCAACGGTGCAGGAAGTCTGTGGCCGTTGCAAAGATGAAAAGTAGCATTTAATTATCAACTAAACCCTTCTGTTTATTTAGTTCATGTATcggtttaaaaatgtaatacagaAACCTCTGCAGCCGTATGCATAACTGTATGTATCGATGCGAATCTGTACAGCAGCATCATGCACAGACGCGGTAAAGATCAAAATCGACTCCGCAACGTTCATTTAGATTAACCagtattactttatttatttatttgttagcATTCTTTTTCATTATGGGTCGATGCAAaaagtcttttatttttatataaatatgaagaacaacATCTCCTGTATCGTGTCTAATTGAATATGAAAGTGAATGTGTTCGTCTGTGTGGTTTCTTTTtcagaaaaactgaaaatatcTGCACATTTATGTTTACAGAGTGACAGAAACTTCCCTTTTGAACTTTACTGACTCAACCAGAGAAAGTAAAAATgtgtctcaaaaaaaaaaaggttgtgcaTTGCTGTAGTTTGCTTGTTGACAAAAACATATGTAAATTTCAAAAGGTTTCATATCAA

Function

GO: NA

KEGG:

id description
ko04120 Ubiquitin mediated proteolysis

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU317968 lncRNA downstream 124575 11343961 ~ 11345876 (-) True G234153
TU317961 lncRNA downstream 128612 11336610 ~ 11341839 (-) True G234152
TU317876 lncRNA downstream 136362 11333367 ~ 11334089 (-) True G234080
TU317874 lncRNA downstream 137891 11332281 ~ 11332560 (-) True G234078
TU317856 lncRNA downstream 163748 11305611 ~ 11306703 (-) True G234063
TU317991 lncRNA upstream 21964 11524445 ~ 11526302 (-) False igfbp5a
XR_005638326.1 lncRNA upstream 117353 11619834 ~ 11620856 (-) True LOC120554171
XR_005638325.1 lncRNA upstream 118388 11620869 ~ 11621353 (-) True LOC120554169
TU318011 lncRNA upstream 182141 11684622 ~ 11685167 (-) True G234181
TU318026 lncRNA upstream 296082 11798563 ~ 11822502 (-) True G234194
XM_039792836.1 mRNA downstream 2950 11459406 ~ 11467501 (-) True LOC120554153
XM_039792837.1 mRNA downstream 3191 11459406 ~ 11467260 (-) False LOC120554153
XM_039792790.1 mRNA downstream 28525 11393670 ~ 11441926 (-) False spega
XM_039792789.1 mRNA downstream 42027 11388552 ~ 11428424 (-) False spega
XM_039792847.1 mRNA upstream 21901 11524382 ~ 11538321 (-) True igfbp5a
XM_039792804.1 mRNA upstream 65090 11567571 ~ 11684433 (-) False tns1a
XM_039792794.1 mRNA upstream 65090 11567571 ~ 11684433 (-) False tns1a
XM_039792798.1 mRNA upstream 65090 11567571 ~ 11684433 (-) False tns1a
XM_039792799.1 mRNA upstream 65090 11567571 ~ 11684433 (-) False tns1a
XR_005638322.1 other downstream 28525 11390004 ~ 11441926 (-) False spega
TU317805 other downstream 423492 11040007 ~ 11046959 (-) False LOC120554127
TU317684 other downstream 501341 10967423 ~ 10969110 (-) True G233954
TU317694 other downstream 518971 10949523 ~ 10951480 (-) False G233954
TU318109 other upstream 785439 12287920 ~ 12293143 (-) False G234253
TU318311 other upstream 1450609 12953090 ~ 12954125 (-) True G234405
unassigned_transcript_1566 other upstream 1483336 12985817 ~ 12985888 (-) True trnae-uuc_66
unassigned_transcript_1567 other upstream 1554135 13056616 ~ 13056687 (-) True trnad-guc_30
unassigned_transcript_1568 other upstream 1609677 13112158 ~ 13112228 (-) True trnag-gcc_27

Expression Profile