RNA id: XM_039792798.1


Basic Information

Item Value
RNA id XM_039792798.1
length 8163
RNA type mRNA
GC content 0.51
exon number 34
gene id tns1a
representative False

Chromosome Information

Item Value
chromosome id NC_053135.1
NCBI id CM020932.1
chromosome length 21835524
location 11567571 ~ 11684433 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

ggttacagaATCCTATCCCAGCGCCGAGGGTGGAGATAAGAGGCTGGCAGACGAGACGGGACAGACGCACGCATGGCTCGCCTCAACTGGTGCCTGGCTGCCGTCATCAGCTGGGGCAAGTTCCTCTTTGCCTGCTTCTTTCCTCTGCGGGGGTCCAAGCGAGACAAGCCCGACGAGCTGGAGGgcgtccacacacacaccttcaagCTGAAGCCATTCAAGAAGGCCAAGAGCTGTGATATATGCAAACAGGCCATCACCAAGGAGGGCCTCATCTGCAAAGcgTGCCGGTTGTCCTGCCACAGAAAATGTGAAGTGAAGGTCACCACATCATGTCAAACAACTACCAACAATGAGCTGCCTCCCACTCCTCAGCTGCCGTTAAAGCATGTAGATACGCCGGGATCTACAAGGTCCTGCAAGAGTGTGGAGATAAGGCGAAAGCAGTCAGGGAGTCAGAGTGTGGTTCAGGCCATGGAGGAGAGCtatgaggtggacctggtctaCATCACGGAGAGGATCATCTCCGTCTGTTTCCCCGCTGCTGCTGAGGAACGCAGCTACACCGCCAACCTCAAAGAGGTGGCGACGATGCTGCGGTCCAAACACGGCGAGCACTATCTGATTCTCAACCTGAGCGAGTGGAGGAGTGATTTGTCAAAGTTAAACCCAAAGGTTCTGGAGTTTGGCTGGCCGGATCACCATGCACCGGCGCTGGACAAGATCTGCAGCATGTGCAAGGCCATCGACACATGGCTCAACGGAGACCCGCGGAACGTAGTGGTACTGCACAACAAGGGGAACCGAGGTCGAACAGGGGTGGTGGTGGCGGCGTACATGCACTACAGCAGCATATCCGCAAGTGCTGACCAGGCGCTGGACAGGTTTGCCATGAGGCGCTTCTACGAGGACAAAGCACTTCCTGTGGGTCAGCCGTCACAGATAAGGTACGTGCGATACTTCAACGGCCTTCTTTCCGGACACATCAAAATCAACAACAAGCCACTGTTCCTGCATCACGTTATCATGCACGGCATACCCAACTTTGAATCCAAAGGAGGCTGCCGTCCTTTCCTGAAGATCTACCAGGCCATGCAACCAGTCTATACGTCGGGAATATAcAATGTCCAAGGAGACAGCAACACCAGTATCTGCATCACCATTGAACCCGGCCTGCTTCTAAAGGGAGACATcctgTTGAAGTGTTACCACAAGAGGTTCAGAAACTCCACCAGAGATGTGATGTTCAGGGTGCAGTTCCACACCTGCGCCATCCACGACCTCGGGGTGGTGTTTGGGAAAAACGAGCTGGATGAGACCTTCAAAGGTAACGGCTCTCCGGATGAAAGGTTCCCAGAATATGGGAAGGTGGAGTTTGTTTTCTCATATGGACCAGAAAAAATCAAAGGCCTGGGCCACCTGGAGAACGGGCCGAGCGTTTCTGTGGACTACAACACCCAGGACCCTCTGATCCGCTGGGATTCCTACGAGAGCTTCAGCCAGCGCTGTGAGGACACTGTGGACGGCGAGCACGATGCTGATCATACCCAAGGTCCACTTGATGGAAGTCTATATGCCCGGGTCCGCAAGAAAGACTCCCTGGAGGGAGTTGTCACCATCAACGGCCTCCCAGTCCATGAAAACCCCTTGACCAATGCAGAGAATCCGTTACAACACCCCAGCCATCCTCTCCAAACCACTGACCAGACCCTTCCTGTGACAGGCCACGCCGCCCTCCCTGCCGTCGACCACACCCTCTCCGTGAGCAGCGACTCAGGCAACTCTACCGCATCCGTCAAGACTGATCGTACTGATGAGCACAGCCAGTCCGTGCAGGGCCCCGTGAACCACAACAACCCAACTGCGACCCACCCACCGCTCAGCCCACAGGAAAAAAGAGAGCTTGACCAGCTTCTGAGTGGCCTAGAAGCACCAACTTACCAACGACAAGACTACCTGTCCACGTCCACCAGTCCAGGAGGAGGTGTCCGGCACCTTGTTCCAGCGCAGGTGCACGTCAACGGGGGCCACACCAGGCTAGTTGGGGCCCCTTCAACAGAGGAGCGTGAAACAGATATTTTAGACGACGAGCTGCCCAACAGCCAAGAGGGTAACAGTGTGGACAGCTTGGGCACGCTCTCATCCCTAGAGGGCCAGGCAACACCAGCTGACCTTTACTACCAATCACCGACCCCTAACAGCAGGCAGAACGACCAACCCTATCTTGAGAGAGTGGTTCTTGGGGAAAAGTTAAGCGAGATGCCCGTGCATGGAATACGTACGCCCACGACGATGCAAGAGAGGTCTGTGGACTCTGCATCGCCACAGGGGGGATATAACAACTACCAGAACGGAGGAGGGATGTACCGTTCACAGTCCTTTGGGAATCCGCCAGCCAGCAGCCCTGAGACCAACCCTAAACTGATGCCCAGGGCCCCAGAGAGGAGCACCAGTAGTCGAGAGGCTGTTCAAAGAGGTCTCAACACCTGGCACCAGTATAGCCTCCCAGATGATCCGTTTGGCCCTCCTCTTCAGTCAACCCATAGCTTGCCCCACTTCCCCAATTCAGCCTCGCAGCGGGACATTGAGCAGTCCATTGAGGCGCTCAACATGCTAATGCTGGACCTAGACCCAATCAACTCCCACATGTCCAAGTCCCACAGTGCGCCTCCTGGGGAGAACAGCCTCAGTTCCTCCCAGGTGCCCTTCTCACAGACCCTTGCAAGACCCTCTTACCAAGCAGACTCTGCTATCCATGGTTTCAACAACTCTGGGTCTGTCAACAACTCCTTTCATCAGCCACTGCGGTCAACTGGGAGAGTCTCAACGTTGCCCAATCAGAGCCCCGTGATGGAATCCCCGGTGTATTCTCCCCAGAGGCCCAACGCCGCCTACCAACACCAAAACACCACCCCGACACACACCCCAGAGCCCTACCTCCAGACACGCCAAGCAGCCCACCACTACCCCACAGATCCCTCCGCTAATTTCAACCAGCAGGTGCCAGTAAAGCCTGTGAACTCTTACCAAGGCAGTGTGGTTTCCCACTCCCCGGACCTGCAGGGATCGTCTCCTTATCCAGGCTACAgtgcctcctcctctcccctccctgtACTCACCCCCCAACCTAAGGATATGTCTTCTTCATCCTTGCCTAGAGAACAAGAAACAGAGGAGGAGACGCTTAACTTGGAGGGCCTTGTGGCTCACCGCATCGCTGGGGTTCGCTCCAGAGGAATGACCCCAGAAGTGACGCAGGAGATGGGTCGTCGTCGGACCACCAGTGAGGGACAGTACCAGAGCAGCCATGATAACATGTCGATGGTGGATTCACCGGACTTCGCCCACAATCTGGCTCTCAACCCCGGAGGAAGACCCAGAGAGGGTACCATACACAGCTACCGGGAGGCGTTTCAGGACGACGATGGGGACAGTCCCATCTTCGGAGGCGGTGGTGAGAATTCCCCCCAGACCCCCAGCTTTCCCGTGTCGCCACAGACTCCCTACTTCAACATGTCTCGCTCTCCTCCAGGTTTGACCAAGACTCCTCTGTCAGCGCTGGGACTGAAGCCCCATCACCCGGGCGGATCAGACTCTGATTCTAATGATGGAGAGCAAGATAATCGCAGTTTTGGGGACTCCAGAGCACAAGCGTTCAAcgttcctctctcctccagtAGTCCCATCCACAGCGCTGATGGAAGGAGGATTGGTTCTTCAGATGGCGCCCCGCACAGCCCCATCCCCTCCTACCCCCACAGACCCGCCTCCCCCGAGGGCTCCCAGGTCAACATCATGGGCGTCCACACCATCCCCGGCAGCCCCAACACCCTCCACCGCACAGTGGCCACCAACACGCCGCCGAGCCCCGCCCTCCAGAGACGCTTGGGTCAAGCCAGCCCCTCGTTGGCCAGACACCCCTCTCCATCCGGCGTCCCCTCCAGCCCTCTGATCGGCCGGAAAACAGCAGCCGGCGGCGTGCCTCCCAGCCCCTTGATGGGGCGCCGCACGGCGGCGAGCGGCCACAGCACGCCTGACGAGCTGGGCGCTGCTTCTCGTCAGTGGAGCGCCCAGCCGCTCTCCACGCCTGCCTTCCCCGTCTCCCCACAGCTGCCGGAAAAGAGGCACATGTCCAGCGGTGACGCCGAGAGGACGGACAACAAGAACCTGACGCCGACGCCGGCCAGCGGTGGCAGCACGCCAAACCTGTCTGGCACGCACACGCTCCCAGACGTCTCAAAGTCCATATATGATGGTTATCCAGACATTAAGATGAATGTCAAGTTTGTCCAGGACACTTCAAAGTACTGGTACAAGCCAGACATCACCAGGGAGCAAGCGATCAATCTGTTGAAGGACAGGGAGCCCGGGGCGTTCGTCATAAGGGACAGCCATTCCTTCCGCGGAGCCTACGGCCTGGCCATGAAGGTGGCCTGCCCCCCACCGACCATCCAACAGAACAAAAAAGTTGGTGACATGACTAATGAGCTGGTGCGGCACTTCCTGATTGAGACGAGCCCCAAAGGCGTCCGTCTGAAGGGTTGCCCCAACGAGCCCTACTTCGGTTGTCTTTCTGCTCTGGTGTACCAACACTCGATGACTCCGCTGGCTCTGCCCTGCAAGCTGATGATCCCCGCCAAAGACCCAAATGAAGAGGCGTTGGAGCTGGCCACGCCTACTGATCCAGTTGTTGAACTTCTGAAGCAGGGAGCGGTTCAGAAGGTTCCTGAGGACGCCCATGCGTGCAATGTTCTCTACATAAACTCGGTGGACATGGAGTCTCTCACGGGCCCTCAGGCCATCGCCAAGGCGATCGGTCAGACACTGGCGACCAACCCTCTGCCTGCCGCGACCACCGTTCACTTCAAAGTGTCCACGCAAGGCATCACGCTCACCGACAGTCAGAGGAAACTTTTCTTCAGACGACACTATCCCATCAACACGGTAACCTACTGTGACATTGATCCCCAGGACAGAAAGTGGGGCAAAGAAGGCGGTGGCTCAGTGAAGCTTTTTGGATTCGTGGCGAGGAAACAAGGAAGCACAACAGACAATGTCAGCCACCTGTTCGCTGAGCTGGACCCAGATCAGCCCGCCTCCGCCATCGTCAGCTTTGCCTCCAAAATGATGAAGCGGTGAAACCCCTGACGTCCAAATGGCAGCGGCCGTTTTGAAATCTTCCTTCGTCATTGGTGTCTTTTTTTCGCCAGGACtcgatgacttttttttttttgtttcccgttttttttgttttgtttcctttctctctctctctctctctctctctctctctctctctctctttctctctctttttcctctctgccTTGCTGGTTTGTCTTgactttggtcttttttttttttttggaagagtCTCTATTTAAAAGGATTTGGCGTGGATCCAGAGTGGCGCTAGAGGATGTGCGGTGTGGAGCTGTGAACGTGACAAACGTAAAAGCAATTTGAAGGGAGAAAATGTACTAGCAGGGGGGAACCTGTGGAAGAAAAACGCTAGCTAAAAGACTAAAAGGAACAACGCTAAGTTCAGTCGCGGAACATGTACTGTAAGGACTCGTACGTTTCAGGGTTTTCCGTttgtcgtttttgtttttttgtcgaTTGATTTACCAAAGGTAGTTGCAATACAAGTGCAAGAATGATGTAGCTAGTAAGCCATTATTATTTCCTCTTTTTAAAAGATGAAGTGTTActccagaaaaaaagaagaaaaaaaaaaatacagtttcttCTTGAACTTGTCTTCAGGAAAAAAGTTGGCCTTGATGGCTTTTAGCAAAACAGTGTCTGAAGACCTTATGCATGTTAGCTTGATCTTTAAGCTTGGTTCTTCTAccttccacaaaaaaaaaaaaaaaaaaaaaatcattgtgaAATCCTTAGAGTGGTCATTTCCGGGTCTGTTGTGTGTTGGAAAGGGCTCTGCAGTGAAACGTCGACTGATCTAAACTGCGCATAGCAAaccagactttaaaaaaaacttttaaaaaaaaaacaacaacgccACGCTAAGGTCACTGCACTTTGTGTCAGCGCACACTTGCATCACCTCGGCCTCCGGTGGTCCAAGCCtgatctctccctctttctctctcaaacaTATTGGATTCCTGGAATCAGCAAAGCTCCTGATCGCATGgcagacaggagagaggaagacTGTTCACTGTCCACGAGATGGCGCCACTCATTCAGGCTTGGACCCAAAGTCACATAGACTTGCCCATCACCAACTGCTTGCAGTAGTGGATCATGTTCATAGACGCTGCCACTGAAACACACTGGAAATCACCAGGGACTGGCCCCCAAATGACCTGGACCTATGCACTGTTCTTTATGCATGTTGTTGTCCCGAATTGCACCCACCCTCATAGCTACATTCAACATCACTGAAAACATTCTAATGCTGTGTgctaaaaatgactttaaaaccTTTTAGACAAGTACACTGAGGTTGTACGACTTGTCAAAAGACTGCATGAAATAGACAACATTTTTGTACTCTTCTATGAGTCCCGAAAAGAAGTAGACAACCCATTGTTGAAGTAGTCACATGATGGTGAGATGctatatttttacttattcttttctttatttttggtcCATTTGAGCCAGGGTTACCTTTCACTGTATCAAGGACAGTCCGGTCTTTGTTTTTCCTTCCACAGTGTCTTTCAAATTTAAATTTAGATACCTTTTagggcaaagaagaagaagaagaaaaagaagaagaagaagaagaaaaaaaaaaaggagtttcCACACTGTGCGCAAATGCCTGCTTGTTGAACACATGCTCAACCATTCACAATAAGCTAAGGAAAATTGATATTGATATAAATGTACATACGTAGATATACTACTTTGAAAGGTGACATAGcgaaaaagtatttatttttgttgctttggTCCCTCATGATTactcatatatacatatattgtacAGTCTAGATAAAGAAGATTACCTAAtgggttgagaaaaaaaaaaaagatatacttATTTTGGCTAATGATTTCAAGGTCTGAcgattttgaaatgtgtttgaatATATGGTGTACATTACTTTGTACatgtatatgtttgttttttcgcCTCGTCATGTTTTTCcgttcttattttttatttttttttgcgttgTCTCAGAACGAGGTAGGGCATGAATGAGATAGAAGCGTCTGATTTGCATGGACAGAAGCATTTTGAGTGCGTTTCAACAGCAGAAACGCGCTCACAGAAGCAAATGCGTTGTAGCTGATCTTAAGATCTTTTAGAAAAGGGAAGCACGAACAAGTTCGGAAGCCAACCTCAAATGCAATATGAAAACAGCTGTATGCACCCCATAGTTAACAAGTATAATTTTGCCAAAGATTCAAACAATTTACATCTATGCCGACTGGCTGCATGTCGCTCTTTTACGTTCAACTGCTACTCAGTTtccattttttgtgtgtgtgtgtgtgtgtgcgtgttccaCACTTCACACACCTCGCTCAGCTTTAGCAGCAAATGTAAGAAAGTTCAACCCCGCCAGGACacacagaaatgtgtgtgttatattgGTCGTATACAGTCAAGTAGCGCAGGGGCCCTTGGGTTTACACAGCGAGACATTCAGCTGCAGATGACGAAAGCATGGAATTTGTTGTTACTGGTGTCTCGAACGCACCAAAAATGTGTCCGCCTCCATCGGCTGttcaagagaggaaaaaaaaaaaaaaggtctactGTGCCCCAGTTGGAAGTGTGTACACTAAAGCACTTACATTCACAATACCGAAAGAAAATTCCATATGGGTGTCACTGCTGGAGGTAAACGAAGTTGGACGTGTCTCACCGTGACGCTAAAGCTCCATAGCTGCAGCTTTCGTCAGACTGCCAAAGGTGTCTTCTCCGGGCCCTCTCGAAAAGtcactgatttatttattcttatttattcttttcttatttttcctgatatgtttaaaaagaagaaaaaaaaagaacttgtTACATTGTCGCATCATCacatttttgcagtttttaacGGTCAACGAATGGGAGGAATGTAGCCTACGGTGGCGCTTGATTGAGAGCAAAGAGGTAACAGTGCACTTAAATTGACCTTTATGCCATTTGTagtcatttggaagaaaaagaaaaacggg

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU317991 lncRNA downstream 41269 11524445 ~ 11526302 (-) False igfbp5a
TU317975 lncRNA downstream 78094 11458937 ~ 11489477 (-) False LOC120554153
TU317968 lncRNA downstream 221695 11343961 ~ 11345876 (-) True G234153
TU317961 lncRNA downstream 225732 11336610 ~ 11341839 (-) True G234152
TU317876 lncRNA downstream 233482 11333367 ~ 11334089 (-) True G234080
TU318011 lncRNA upstream 189 11684622 ~ 11685167 (-) True G234181
TU318026 lncRNA upstream 114130 11798563 ~ 11822502 (-) True G234194
TU318069 lncRNA upstream 437807 12122240 ~ 12201428 (-) True G234225
TU318086 lncRNA upstream 515643 12200076 ~ 12270069 (-) True G234238
TU318091 lncRNA upstream 526501 12210934 ~ 12212609 (-) True G234240
XM_039792847.1 mRNA downstream 29250 11524382 ~ 11538321 (-) True igfbp5a
XM_039792832.1 mRNA downstream 65090 11470451 ~ 11502481 (-) False LOC120554150
XM_039792831.1 mRNA downstream 65090 11470451 ~ 11502481 (-) True LOC120554150
XM_039792836.1 mRNA downstream 100070 11459406 ~ 11467501 (-) True LOC120554153
XM_039792839.1 mRNA upstream 23894 11708327 ~ 11715150 (-) True LOC120554155
XM_039792840.1 mRNA upstream 23894 11708327 ~ 11715148 (-) False LOC120554155
XM_039792842.1 mRNA upstream 33748 11718181 ~ 11724139 (-) False LOC120554156
XM_039792844.1 mRNA upstream 33748 11718181 ~ 11724138 (-) False LOC120554156
XM_039792845.1 mRNA upstream 33748 11718181 ~ 11723992 (-) False LOC120554156
XR_005638322.1 other downstream 125645 11390004 ~ 11441926 (-) False spega
TU317805 other downstream 520612 11040007 ~ 11046959 (-) False LOC120554127
TU317684 other downstream 598461 10967423 ~ 10969110 (-) True G233954
TU317694 other downstream 616091 10949523 ~ 10951480 (-) False G233954
TU318109 other upstream 603487 12287920 ~ 12293143 (-) False G234253
TU318311 other upstream 1268657 12953090 ~ 12954125 (-) True G234405
unassigned_transcript_1566 other upstream 1301384 12985817 ~ 12985888 (-) True trnae-uuc_66
unassigned_transcript_1567 other upstream 1372183 13056616 ~ 13056687 (-) True trnad-guc_30
unassigned_transcript_1568 other upstream 1427725 13112158 ~ 13112228 (-) True trnag-gcc_27

Expression Profile