RNA id: XM_026913672.2


Basic Information

Item Value
RNA id XM_026913672.2
length 3764
RNA type mRNA
GC content 0.57
exon number 18
gene id magixa
representative False

Chromosome Information

Item Value
chromosome id NC_047602.1
NCBI id CM018548.1
chromosome length 30442583
location 13616604 ~ 13688929 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

AGTATTTAGGTGAGCAGTCTTGTTCAGTCGCAAAGGCAGGCTTTTTGTCCAATCGCTTCCCTAATAGGCGGGTCCTAATCGCACTGTTTCACACAGCATTCCCTCCCCATCCGGGCTCCGCTCGCCTCTCCGGCTTATCACCGCTTCCTGATCGCCGAGCCCGGGACACACAGAACTGCACTGACCGCGCTGTCATTTGGACCGGTGTTGTTGTAGCCGAGGAGCTCTAGAGGCATGGCTACCGCGCTGTAATGCTGCACTGCTGTCTTCTCCTCTCACAAGCTCATCCATCCTTACCATcaccatcaacatcaacatcagcagcagtgcagtgctaTGTATGGATCCGTAAGCTAAGCCGCGTCCCTcatatactacatactacaGCAGGATCCGCAGGCTCCAGCCTTCTCCAGTATTGATAGAGCTTTTAATAACCAGATTCGAGCCGCAAGGCAACGCGTCGACGGCAGGAGCTGGAATTATGAAGCGTTGGCGCCATGTCTAAGGCTACAGTCAAGAAGCTGCACTGGCGTTCCAAAGTTCAGGAGAGCTTCGTTCCTCTGGGTGGAGCCTCGGGGGAGCTGGGTGTGGCTATTGGAGGTGGTGCCGACTATGGCGAGTTCCCATTCGTCACAGCAGCACCGGGAGGAGGCGCTACAGTGGGTGACATCATCCTGGAGATTGGCGGCACTCCTGTCCTGGGCATGACCCTGGGAGATGTCAGAGGGGTTCTGAACTCGTGTCCTCATCCCATCCGCATCAAAACCGTTTCACCAGGCTCCACTCTGTGTAAAGACCTGAGATTATATTTAAGCAAGTGCTTCACACCTGGATCCATGGACAGCCAACTGCAACAGGTCATACGGGAGAACCTTTACCTGCGTGCTGTGCCCTGTACCACTAGGCAGCCGCGGGACGGCGAGATCTCCGGAGTCGACTACAACTTCGTCTCGATTGAGGAGTTCTTCTCTCTGGAGGAGTCAGGAGCTCTGCTTGAGAGCGGCAAGTTCAAAGGGAACTACTATGGTACGCCACGGCCGGTCCACATTGGGCCCGACAGCCCACCTATCACCTACCAGGAGCACCGCAACCTGCTGCGGAACTTCCGCACACGCAGCAAGTCCCTCAGTAACCTGGAGAAGGCTGTCGAAGAGGGAGACAACAGTGAGGAGGATTCTGGTCTCTCAGCGGGTTCTGCAGGAGCGAGCAGTGCCCCCACTACTACTATTGTTTCGCCCAATCAGACGTGGGACTCAGGTGGACCTCGGGATGGTGGTGTCCCGATGGAGAACGGTGCCCGTGGAGGGGCATTGCCTGAAAACTGGGAGATGGCATTCAGTGACTCAGGAGAACCTTACTACATCGATCATAACTCAAAGACGACGAGCTGGCTGGACCCGCGGACTCACAGCAAAGAGGTGGTCAGCAAGacagagtTACCTCCATTCACAGACCAGCCATCTGAACTGAAGGGCTATTCCATCCACACACGTCTCTCAAAAGGGCCAAGAGGTTTTGGCTTTAACATTGTAGGGGGCAGCAGACCCAGAGAATTCCTGCAGGTGTACAGCGTCACACCTGGAGGCCCACCTGCCCTTAACACAGCGGACATCCTGGTCTACATTAACGACACATGTGTGCTGGGTATGTCCCACAAGGAGGTGGTGGAGATGCTGAAGGCCGTGCCTATGGGCCACAGTGTGGATGTGGTGCTGCGTAGGGGCTATCCCATGCTTTACAATCCTGATGGCTGCCCCAAGACCAGCCTGTCTTCACCCTCTGACCCCACCCCGGGGTCTGCccaggccccacctcacaatcTGAACCGTTCCACCTCTCATCACAACGGTTTCTACCCCCGGATGCAAAAAGAGCCTTTAGACACCAACGGTAATGTGGCAGCTCCGCCTTGCTACCACATGCCCAATGGAAACTCAGTAGACAGAACTGTAGGAATGGCAGGCCTGCCCTCAAATCTGCCAATGGCAAGGTCGGAGAGACTGAGCTCAAGTCACAGTGATACAGAGGTCAGCACTGTCGTCACACGCAgAGCCTCACTCATTCGCAGCTACAACAACAATACCCTTCCTGCCCCATCTCTGGCTCACCAGAACTCCAAGTCTTCCGAGAGTGATCTGTCCAGTGGTGCCCTCCCTCTGCCGCAGCCTGAGGTAGGCAGTGCACCAGCGCCACCAGGTGCCCCCAGTGCCCAACGCCCACTCGTGCCCCCAACTGAGCTGCCACCCTGTGGCTTCAATGGCTGCCCGGCCAGCAACCCCCCTCGGCCTGCCCCAGGCAACCTGGGATCGCCTGGGGCTGGCACAGGAGGTGAGCTTGTGCCTGTGGCCCTGGGGAGAAGCGAGGGAGGGGGCATGGGCTTCAGCGTGACAGCAGGCGGGCAGGGCGGGCAGTTGGCGCTGATCAAGCGGGTGTGGGACCGGCGCCAGTGCCCGTCCCTGCAGCCGGGCGATGCCATCATCAAGATCAATGGCGCTGATGTGCAGAGCCTCAGCTTCGCACAGGTACAGAGAGTTCTACAGGAACATACAAGACAGGGTGAGGTGGTCTTACTGGTTTACAGAGGAGGAAACATCCCTTCTCCTGTCACCCCAAACTCGTACAACAGTGTTCCTCCACCCCAGGGCCCTCCAGATTTGATGTCTCCTTCCTCAGATGGCCCCACAACCAGCCAAAGCACCCTATCTCCTCAGTCACCCTCCAACGAGCTCCCTCCTCTGGTCCAGAGCACCAGCTTTCTGGACTCTGTGCCTGTTACCCTGACCATGGAGCCACGGGACTGGATGGGGGTTGAGGACATGGCCGTGCAGGGTCCCCGTCTGCCCTCCTCTAATGCTCTAGGAGCCGTGTCCAAAACGCAGCCCGAGGGGAGAGGAGCAGTGCCTAGCAAATCTTTGGAAGTGGAGCTGAGGAGAAGGCCTGGAGAGGGTTTTGGCTTTGTCATCGCCACACAGGACATGACGAATGGATCATCGTCACTGTTCTCTCACAGGTTTGTGACCGTACGGAGGGGCAGTCCAGCAGCCCGCAGCGGTCAGATCCAGCAGGGTGATCATCTGGAGGCAGTGGAGGGCCGCTCTGTGCTCACGCTGCCTCACAGAGAGCTGGCACAGATCCTGCGGCGAGCAGGAAACACACTCCGCCTCACCATCATCCCGCGCTCCAACAACAaTGCCTCCAACCTGACAGAGTACACAGACTTTGATGCAGATAGCAAGTTAAGAAAAGGGCACATAGCCAGACAAAAGcAGGACCCACGGTACTACAGTGTGGATCTGGAGAGAGGCCCGACTGGTTTTGGCTTCAGTTTGAGAGGGGGGAGTGAGTACAACATGGGACTCTATGTGTTGGGGCTGATGGAGGGAGGACCAGCATCTCGCAGCCAGAAaatacagGTGAGTGATCAGCTGGTGGAGATTAACGGGGACAGCACAGCAGGCATGACCCATAGCCAAGCTGTAGAACAGATCCGCAAAGGAGGACACCGCATCCACCTGGTCCTGAAGAGAGGAAATGGATATGTACCAGACTACGTGGAGCTTTCCAGCTTATCACTCTGCATGACCAACTCCAAACAGGGCGAGCCTTGCTTCTATGTCATCGGCCGGACAGAAAACACACGgccaTGAAGGTGGAGCAgcctccccctcctccttccGCTCTGAGGAACCAGGTGAGATTGGAGTGGCTTTCTCCTTGCCCAGGAGCATTGAGAAAGGGGtggacagagaggcagagagacg

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU156088 lncRNA upstream 45632 13570392 ~ 13570972 (+) True G132115
TU156048 lncRNA upstream 115921 13500389 ~ 13500683 (+) True G132081
TU155890 lncRNA upstream 176874 13437922 ~ 13439730 (+) True G131947
TU155891 lncRNA upstream 179646 13435501 ~ 13436958 (+) True G131948
TU155938 lncRNA upstream 181310 13433917 ~ 13435294 (+) True G131987
TU156119 lncRNA downstream 104732 13790471 ~ 13791279 (+) False LOC113527348
TU156121 lncRNA downstream 106123 13791862 ~ 13792709 (+) True G132139
TU156118 lncRNA downstream 107417 13793156 ~ 13794305 (+) True G132136
TU156120 lncRNA downstream 108843 13794582 ~ 13799616 (+) True G132138
TU156341 lncRNA downstream 205471 13891210 ~ 13948808 (+) False dock8
XM_034306380.1 mRNA upstream 74930 13523721 ~ 13541674 (+) False emilin3a
XM_026924721.2 mRNA upstream 74930 13537411 ~ 13541674 (+) True emilin3a
XM_026912780.2 mRNA upstream 126605 13464131 ~ 13489999 (+) True si:dkey-70p6.1
XM_026912789.2 mRNA upstream 126605 13464131 ~ 13489999 (+) False si:dkey-70p6.1
XM_026926495.2 mRNA upstream 230219 13372494 ~ 13386385 (+) False tpd52l2a
XM_034306608.1 mRNA downstream 19427 13705166 ~ 13790276 (+) False LOC113527348
XM_026915078.2 mRNA downstream 19428 13705167 ~ 13791317 (+) True LOC113527348
XM_026915087.2 mRNA downstream 70765 13756504 ~ 13790276 (+) False LOC113527348
XM_026930414.2 mRNA downstream 137359 13823098 ~ 13833297 (+) False porcnl
XM_026930443.2 mRNA downstream 137359 13823098 ~ 13833297 (+) False porcnl
trnae-cuc_18 other upstream 246985 13369548 ~ 13369619 (+) True trnae-cuc_18
trnaf-gaa_25 other upstream 552482 13064050 ~ 13064122 (+) True trnaf-gaa_25
trnav-cac_9 other upstream 554596 13061936 ~ 13062008 (+) True trnav-cac_9
trnad-guc_1 other upstream 1234534 12381999 ~ 12382070 (+) True trnad-guc_1
TU154763 other upstream 1906059 11709454 ~ 11710545 (+) False porcn
TU156117 other downstream 19517 13705256 ~ 13707550 (+) False LOC113527348
TU156645 other downstream 636433 14322172 ~ 14323450 (+) True G132595
trnae-cuc_19 other downstream 1294094 14979833 ~ 14979904 (+) True trnae-cuc_19
TU157849 other downstream 2316322 16002061 ~ 16011604 (+) False G133631
TU157866 other downstream 2316322 16002061 ~ 16018783 (+) True G133631

Expression Profile