RNA id: TU84597


Basic Information

Item Value
RNA id TU84597
length 782
lncRNA type sense_over
GC content 0.58
exon number 3
gene id AMCG00014098
representative False

Chromosome Information

Item Value
chromosome id CM030128.1
NCBI id CM030128.1
chromosome length 42883965
location 1564778 ~ 1569929 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

NNAGGGGAGAGTGGACGTCCTGCTGTTCAACCCCCCTTACGTGGTCACGCCGTCAGAAGAGGTGGGCAGCTGTGGCATTGAGGCGTCCTGGGCAGGGGGCAGGCGGGGCCGGGAGGTGACAGACAGGCTGCTCCCTCTGGTCCCACAGCTGCTGTCCGGCCTGGGGGTTTTCTACCTGGTGGCCGTGCAGGAGAATGATCCAGCAGAGATCCTGAGTGTCCTGGGGGAAGCAGGGCTGCGGGGGGAGCTGTGTCTGAAGCGCCAGGCCGGGAGGGAGACCCTGTCCATCCTGCGCTTCTGTAAACCCTAACCTCTGACCTCAGACCTGGGGGACACAAACTCCAGCTGCCCATCTGTAGATGCTTCCCTGGGGGAGGGGCCAGGAGACCACATGGCCTGTCCGGTCTGTTTGCAGCCAGAGATGGCCTTATATGCAGCGCGAGAGTCTCTGCCATCCTGGGAAAATCACGTTAACACTCGGACAGGCTGGCAGCCGTTCTCTGAGCCAGATGTCTGCAGTTGTCTACCAGAACGAGCGTTaaggatttaaaagaaaagaaatctaTTCCCCACCAAGGCTTAAGGACTGAAGCCTAGAGGATGCAGCTCCACACTCGGTCCAGTACTGTATCAGATGACAGTGCGCCCCCCAGCTCTGCAGCTGCAGGACAGAGTCAGTGTGTGGAGAAGGTGTTGTAAGGTGCAATGGATTTCTAACTCTTTGAGCCTCTGTAACCAGCTCTGCAGCCCCACCTCCAAttcactgctgtgttgtgtgctat

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU84536 lncRNA downstream 466808 1097656 ~ 1097979 (-) True G67691
TU84530 lncRNA downstream 693160 871053 ~ 871627 (-) True G67686
TU84499 lncRNA downstream 1063002 500007 ~ 501785 (-) True G67658
TU84487 lncRNA downstream 1177846 386733 ~ 386941 (-) True G67646
TU84477 lncRNA downstream 1218662 344414 ~ 346125 (-) True G67638
TU84693 lncRNA upstream 254272 1820612 ~ 1821759 (-) False G67818
TU84694 lncRNA upstream 254272 1820612 ~ 1821759 (-) True G67818
TU84715 lncRNA upstream 312863 1879203 ~ 1882950 (-) False AMCG00014108
TU84744 lncRNA upstream 375687 1942027 ~ 1942420 (-) True G67849
TU84795 lncRNA upstream 490509 2056849 ~ 2059491 (-) True G67881
AMCG00014097 mRNA downstream 26582 1537057 ~ 1538205 (-) True AMCG00014097
AMCG00014090 mRNA downstream 110170 1453775 ~ 1454617 (-) True AMCG00014090
AMCG00014091 mRNA downstream 151940 1391356 ~ 1412847 (-) True AMCG00014091
AMCG00014082 mRNA downstream 284390 1267242 ~ 1280397 (-) True AMCG00014082
AMCG00014080 mRNA downstream 332186 1231624 ~ 1232601 (-) True AMCG00014080
AMCG00014105 mRNA upstream 303897 1870237 ~ 1873422 (-) True AMCG00014105
AMCG00014108 mRNA upstream 312868 1879208 ~ 1885432 (-) True AMCG00014108
AMCG00014109 mRNA upstream 329325 1895665 ~ 1898909 (-) True AMCG00014109
AMCG00014107 mRNA upstream 337076 1903416 ~ 1903733 (-) True AMCG00014107
AMCG00014110 mRNA upstream 339810 1906150 ~ 1915590 (-) True AMCG00014110
TU84527 other downstream 773830 790528 ~ 790957 (-) True G67683
TU84434 other downstream 1393573 61992 ~ 171214 (-) False G67612
TU84686 other upstream 235322 1801662 ~ 1869448 (-) False G67813
TU84687 other upstream 240329 1806669 ~ 1869448 (-) False G67813
TU84705 other upstream 273825 1840165 ~ 1842445 (-) True G67825
TU84703 other upstream 293202 1859542 ~ 1863693 (-) True G67824
TU84685 other upstream 300054 1866394 ~ 1869448 (-) True G67813

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
zebrafish (Danio rerio) TCONS_00000059 True 1159 mRNA 0.49 8 NC_007112.7 961607 ~ 970951 (+)