RNA id: TU84694


Basic Information

Item Value
RNA id TU84694
length 643
lncRNA type inter_gene
GC content 0.48
exon number 2
gene id G67818
representative True

Chromosome Information

Item Value
chromosome id CM030128.1
NCBI id CM030128.1
chromosome length 42883965
location 1820612 ~ 1821759 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

NNNaacacagcacaacacaacacaacacaacacagcacaacacagcacaacacagcacaactcaacacagcacaactcaactcaacacagcacaNNNNaacacaacacagcacagcacaggcaTGACTatccacttcacacacacactaacacacagacacactgtccATCTAACAGGGgagtacacatacacacactcactcactcacacctAGTCACACGCACACTAACGCACCCAGGAGGACTGGCTGACAGAGCCGCCAGAGGCTTTCTGCAGGAACAGTCGAGTTGCCCTAGTTGCACATCAGAGTGTGCAGGGTGTGTGTTAGCGTTGCGGACCGCAGTCCGgggctgtagtgtgtgtgtgcagtttcgTAGCGTGTCTTTCTCCCGGGCTCACTGCCGCGCAGCCCCAGTCTCCAGGACTGTCGCAGACGGGGGCACGGGCGAGGggagacagaaacacagcactgaGATGATAATTTATTGTTTGTACAACTGGTATGTGAAAACGATGTGACGAGATTATTTATTGCCATGActatttttatgatgatgattatttaacAAGAATACCAATTGTGCAGATCCGTCTTccttttttagtgttttttaagaaaatgatgtttcttttctctctcgT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU84597 lncRNA downstream 254272 1564787 ~ 1566340 (-) False AMCG00014098
TU84536 lncRNA downstream 722633 1097656 ~ 1097979 (-) True G67691
TU84530 lncRNA downstream 948985 871053 ~ 871627 (-) True G67686
TU84499 lncRNA downstream 1318827 500007 ~ 501785 (-) True G67658
TU84487 lncRNA downstream 1433671 386733 ~ 386941 (-) True G67646
TU84715 lncRNA upstream 57444 1879203 ~ 1882950 (-) False AMCG00014108
TU84744 lncRNA upstream 120268 1942027 ~ 1942420 (-) True G67849
TU84795 lncRNA upstream 235090 2056849 ~ 2059491 (-) True G67881
TU84803 lncRNA upstream 264352 2086111 ~ 2087121 (-) False AMCG00014119
TU84811 lncRNA upstream 273308 2095067 ~ 2124907 (-) False AMCG00014119
AMCG00014098 mRNA downstream 250683 1564778 ~ 1569929 (-) True AMCG00014098
AMCG00014097 mRNA downstream 282407 1537057 ~ 1538205 (-) True AMCG00014097
AMCG00014090 mRNA downstream 365995 1453775 ~ 1454617 (-) True AMCG00014090
AMCG00014091 mRNA downstream 407765 1391356 ~ 1412847 (-) True AMCG00014091
AMCG00014082 mRNA downstream 540215 1267242 ~ 1280397 (-) True AMCG00014082
AMCG00014105 mRNA upstream 48478 1870237 ~ 1873422 (-) True AMCG00014105
AMCG00014108 mRNA upstream 57449 1879208 ~ 1885432 (-) True AMCG00014108
AMCG00014109 mRNA upstream 73906 1895665 ~ 1898909 (-) True AMCG00014109
AMCG00014107 mRNA upstream 81657 1903416 ~ 1903733 (-) True AMCG00014107
AMCG00014110 mRNA upstream 84391 1906150 ~ 1915590 (-) True AMCG00014110
TU84527 other downstream 1029655 790528 ~ 790957 (-) True G67683
TU84434 other downstream 1649398 61992 ~ 171214 (-) False G67612
TU84705 other upstream 18406 1840165 ~ 1842445 (-) True G67825
TU84703 other upstream 37783 1859542 ~ 1863693 (-) True G67824
TU84685 other upstream 44635 1866394 ~ 1869448 (-) True G67813
TU84711 other upstream 48091 1869850 ~ 1871154 (-) False AMCG00014105
TU84716 other upstream 57444 1879203 ~ 1882950 (-) False AMCG00014108

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) TU610 True 214 lncRNA 0.39 1 CI01000000 1383108 ~ 1383321 (+)
rainbow trout (Oncorhynchus mykiss) TU1756541 False 3145 lncRNA 0.45 3 NC_048582.1 28771301 ~ 28774539 (+)
eurasian perch (Perca fluviatilis) TU316875 True 2412 lncRNA 0.39 2 NC_053135.1 8983178 ~ 8985633 (-)
striped catfish (Pangasianodon hypophthalmus) TU610 False 2630 lncRNA 0.48 3 NC_047595.1 442009 ~ 444741 (-)
tiger barb (Puntius tetrazona) TU610 True 861 lncRNA 0.54 2 NC_056699.1 2174322 ~ 2175616 (+)