RNA id: TU610


Basic Information

Item Value
RNA id TU610
length 861
lncRNA type inter_gene
GC content 0.54
exon number 2
gene id G415
representative True

Chromosome Information

Item Value
chromosome id NC_056699.1
NCBI id CM032068.1
chromosome length 31761587
location 2174322 ~ 2175616 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

gtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgcgtgtgtgtgtgcgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtttatgagcaGCAGAAATCAGTTTAACGTCAACACGATTCCATTATCATTCATTCCTGctcttattatatataacatttcataataatttgATATCATCTGACATGGTTAAAAAATGTCACGCAAAGTcgtgcacaatttttttttctcatcttatATCCAGTTTCAGTTGGAAGTGCAGTGGCTTGTGAACGAGCTTCATGTTGACTCTAAACCAGGTTTTTGCAGCAGGTTGTTTCTTTTGTGAAGTTGTTCGACTGGTTTCACACAGATTCAGTAGCTGAATGAACTCCTTCTACCTGATCTTCATCAGACTTCATCTGTCTTCTCCATGCATTCAGTACTGTTCTACCGTCTCAGCGGGAAACGGCCGTTTGACTGAAAATACACAGCActgattttataatttattgtttgtacAACTggtatgtgaaaaaaaaacaaaacccaggatgaatttatttattgttatgctCATTTTGTCTCATAAATACTATTTAACTAGGAATATGAGTGAGCGGCATAGTTCCTATCGaagaaaagtgtgttttttagcCATCTTCgtgaatatatgtgtatataaaacaaaGTGCTATATTTAAAGGTTTACGTTTTATCGATTCATTTGTTGCCTCGCGGAAATGTTCATCTGTTTTCGAACTAGTTTCTAAAATGCAATCAATAAACAGGCCATTTCAG

Function

GO:

id name namespace
GO:0016592 mediator complex cellular_component

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU599 lncRNA upstream 54931 2119116 ~ 2119391 (+) True G408
TU595 lncRNA upstream 92502 2081472 ~ 2081820 (+) True G404
TU476 lncRNA upstream 182555 1930657 ~ 1991767 (+) True G318
TU654 lncRNA downstream 99391 2275007 ~ 2275341 (+) True G450
TU640 lncRNA downstream 100376 2275992 ~ 2276271 (+) True G439
TU668 lncRNA downstream 147669 2323285 ~ 2327330 (+) True G457
TU641 lncRNA downstream 197099 2372715 ~ 2373156 (+) True G440
TU681 lncRNA downstream 244860 2420476 ~ 2421647 (+) True G463
XM_043247501.1 mRNA upstream 2789 2153236 ~ 2171533 (+) True LOC122350785
XM_043247510.1 mRNA upstream 2789 2153236 ~ 2171533 (+) False LOC122350785
XM_043239631.1 mRNA upstream 212679 1942061 ~ 1961643 (+) True gart
XM_043239643.1 mRNA upstream 232701 1937450 ~ 1941621 (+) True LOC122345473
XM_043239653.1 mRNA upstream 232701 1937450 ~ 1941621 (+) False LOC122345473
XM_043241076.1 mRNA downstream 2595 2178211 ~ 2184501 (+) True adamts1
XM_043240894.1 mRNA downstream 10205 2185821 ~ 2192072 (+) False cyyr1
XM_043240464.1 mRNA downstream 17305 2192921 ~ 2219736 (+) True appa
XM_043240634.1 mRNA downstream 17306 2192922 ~ 2219736 (+) False appa
XM_043240715.1 mRNA downstream 17306 2192922 ~ 2219736 (+) False appa
TU311 other upstream 732656 1439073 ~ 1441666 (+) True LOC122327253
TU309 other upstream 732883 1439073 ~ 1441439 (+) False LOC122327253
TU310 other upstream 732883 1439073 ~ 1441439 (+) False LOC122327253
TU190 other upstream 1053601 1119719 ~ 1120721 (+) True G136
TU24 other upstream 1996122 177716 ~ 178200 (+) True G10
TU616 other downstream 10243 2185859 ~ 2192464 (+) True cyyr1
TU731 other downstream 308057 2483673 ~ 2485988 (+) False grtp1a
TU718 other downstream 336105 2511721 ~ 2513859 (+) False pcid2
TU696 other downstream 348909 2524525 ~ 2527244 (+) True G474
TU717 other downstream 419315 2594931 ~ 2596302 (+) True G482

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
eurasian perch (Perca fluviatilis) TU316875 True 2412 lncRNA 0.39 2 NC_053135.1 8983178 ~ 8985633 (-)
bowfin (Amia calva) TU84694 True 643 lncRNA 0.48 2 CM030128.1 1820612 ~ 1821759 (-)