RNA id: TU476


Basic Information

Item Value
RNA id TU476
length 787
lncRNA type read_through
GC content 0.38
exon number 2
gene id G318
representative True

Chromosome Information

Item Value
chromosome id NC_056699.1
NCBI id CM032068.1
chromosome length 31761587
location 1930657 ~ 1991767 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

ccacgtttttatttttggaagtcTTCCAGACATTTGCGAACAATCCTTTACCCTTTAAtcgatttatttttacatcacaTAATCATTTCGGCGTCTCCTGTATACAGTAGTCAGCATTTGAAGCGGATCAAAACCCAAGACAAGATCACATCGGTTTTAAGACAACTTGGATATTAGATCGTCGTCTGCTGTCTTATTCTTCCCTTTGTCGTTCAGTCTGAGTAAGAGATACGAGGGAATGTTTGAGCTGATTCAATAAACTCTTATCTATCATCACCGTCTCCTGTTAATACTCGTGAAGGCCAGACGAGACTCGTTGGTGACAGGTTTTGGGGTTTTAGGCAATTTTGCTGAATAGTTGTTGTGATAGCAAAACAAATCTGGCATCCGGGTCCAGCTTTTTTAACACATATCATTAAAGAGGAAGAGCGTTCCGCTTCATACACGACTAAACATATTCAATCGAACCGTTTTCACATTAATGTACGACCTCAGACTAAACAAGCTTTATAAAGAACAGATCGGACCGGCTTGCTGATCGATGAATATCAGAGGAACACACACATGTTCATGTTCCTTAAGGATGAAGATCTAGAACATCACGGGTGTATGAAACTCTGCAGGATGATGAGAcgacttacacacacacacacacacacacacgagaatCTGGGTCAGGCATATCTACAGGAGGACTGCAGTCACTAATGTcctgtagacacacacacacacacacacacacacacacacacacacacacacacaggcacacacacacacagacaca

Function

GO:

id name namespace
GO:0042612 MHC class I protein complex cellular_component

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU469 lncRNA upstream 24694 1905652 ~ 1905963 (+) True G312
TU401 lncRNA upstream 319481 1541322 ~ 1611176 (+) True G273
TU396 lncRNA upstream 445014 1485146 ~ 1485643 (+) True G270
TU321 lncRNA upstream 462526 1467485 ~ 1468131 (+) True G227
TU288 lncRNA upstream 531683 1396899 ~ 1398974 (+) True G203
TU595 lncRNA downstream 89705 2081472 ~ 2081820 (+) True G404
TU599 lncRNA downstream 127349 2119116 ~ 2119391 (+) True G408
TU610 lncRNA downstream 182555 2174322 ~ 2175616 (+) True G415
TU654 lncRNA downstream 283240 2275007 ~ 2275341 (+) True G450
TU640 lncRNA downstream 284225 2275992 ~ 2276271 (+) True G439
XM_043246036.1 mRNA upstream 37461 1712042 ~ 1893196 (+) True zgc:152904
XM_043246053.1 mRNA upstream 37461 1712042 ~ 1893196 (+) False zgc:152904
XM_043246046.1 mRNA upstream 37461 1712042 ~ 1893196 (+) False zgc:152904
XM_043237937.1 mRNA upstream 338727 1584612 ~ 1591930 (+) True LOC122343461
XM_043242418.1 mRNA upstream 347245 1574618 ~ 1583412 (+) True LOC122347221
XM_043247501.1 mRNA downstream 161469 2153236 ~ 2171533 (+) True LOC122350785
XM_043247510.1 mRNA downstream 161469 2153236 ~ 2171533 (+) False LOC122350785
XM_043241076.1 mRNA downstream 186444 2178211 ~ 2184501 (+) True adamts1
XM_043240894.1 mRNA downstream 194054 2185821 ~ 2192072 (+) False cyyr1
XM_043240464.1 mRNA downstream 201154 2192921 ~ 2219736 (+) True appa
TU311 other upstream 488991 1439073 ~ 1441666 (+) True LOC122327253
TU309 other upstream 489218 1439073 ~ 1441439 (+) False LOC122327253
TU310 other upstream 489218 1439073 ~ 1441439 (+) False LOC122327253
TU190 other upstream 809936 1119719 ~ 1120721 (+) True G136
TU24 other upstream 1752457 177716 ~ 178200 (+) True G10
TU616 other downstream 194092 2185859 ~ 2192464 (+) True cyyr1
TU731 other downstream 491906 2483673 ~ 2485988 (+) False grtp1a
TU718 other downstream 519954 2511721 ~ 2513859 (+) False pcid2
TU696 other downstream 532758 2524525 ~ 2527244 (+) True G474
TU717 other downstream 603164 2594931 ~ 2596302 (+) True G482

Expression Profile