RNA id: TU599


Basic Information

Item Value
RNA id TU599
length 276
lncRNA type inter_gene
GC content 0.46
exon number 1
gene id G408
representative True

Chromosome Information

Item Value
chromosome id NC_056699.1
NCBI id CM032068.1
chromosome length 31761587
location 2119116 ~ 2119391 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

GGATTTCTTTTCttgaaatattatcaaaatttTGATCgtttttgcatgaaaaaattacaaatatctgCCAGTGGGGTATGAAAAATCATAGTAAGCCCATTAGcagatatacattttaaaaaaggataatattttcagaaaacgagacaaaatatcattttacctgtcaattaaatgcatgctgATCCAAGAAAAATACGTAAATAATAAGGAAGACATACATGTTGCAGTGtatttgaatgttatatttaatattttaaaagcactaaaatgtCC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU595 lncRNA upstream 37296 2081472 ~ 2081820 (+) True G404
TU476 lncRNA upstream 127349 1930657 ~ 1991767 (+) True G318
TU481 lncRNA upstream 167796 1936173 ~ 1951320 (+) False G320
TU480 lncRNA upstream 182469 1936173 ~ 1936647 (+) True G320
TU478 lncRNA upstream 185972 1931816 ~ 1933144 (+) True G319
TU610 lncRNA downstream 54931 2174322 ~ 2175616 (+) True G415
TU654 lncRNA downstream 155616 2275007 ~ 2275341 (+) True G450
TU640 lncRNA downstream 156601 2275992 ~ 2276271 (+) True G439
TU668 lncRNA downstream 203894 2323285 ~ 2327330 (+) True G457
TU641 lncRNA downstream 253324 2372715 ~ 2373156 (+) True G440
XM_043239631.1 mRNA upstream 157473 1942061 ~ 1961643 (+) True gart
XM_043239643.1 mRNA upstream 177495 1937450 ~ 1941621 (+) True LOC122345473
XM_043239653.1 mRNA upstream 177495 1937450 ~ 1941621 (+) False LOC122345473
XM_043246053.1 mRNA upstream 225920 1712042 ~ 1893196 (+) False zgc:152904
XM_043247501.1 mRNA downstream 33845 2153236 ~ 2171533 (+) True LOC122350785
XM_043247510.1 mRNA downstream 33845 2153236 ~ 2171533 (+) False LOC122350785
XM_043241076.1 mRNA downstream 58820 2178211 ~ 2184501 (+) True adamts1
XM_043240894.1 mRNA downstream 66430 2185821 ~ 2192072 (+) False cyyr1
XM_043240464.1 mRNA downstream 73530 2192921 ~ 2219736 (+) True appa
TU311 other upstream 677450 1439073 ~ 1441666 (+) True LOC122327253
TU309 other upstream 677677 1439073 ~ 1441439 (+) False LOC122327253
TU310 other upstream 677677 1439073 ~ 1441439 (+) False LOC122327253
TU190 other upstream 998395 1119719 ~ 1120721 (+) True G136
TU24 other upstream 1940916 177716 ~ 178200 (+) True G10
TU616 other downstream 66468 2185859 ~ 2192464 (+) True cyyr1
TU731 other downstream 364282 2483673 ~ 2485988 (+) False grtp1a
TU718 other downstream 392330 2511721 ~ 2513859 (+) False pcid2
TU696 other downstream 405134 2524525 ~ 2527244 (+) True G474
TU717 other downstream 475540 2594931 ~ 2596302 (+) True G482

Expression Profile