RNA id: XM_043246036.1


Basic Information

Item Value
RNA id XM_043246036.1
length 4876
RNA type mRNA
GC content 0.48
exon number 18
gene id zgc:152904
representative True

Chromosome Information

Item Value
chromosome id NC_056699.1
NCBI id CM032068.1
chromosome length 31761587
location 1712042 ~ 1893196 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

ggatcCTCTACTTTCATTGGGCTCATTGAGGTTTCAACTCGCGACACGAGCGGCTGTCCGTCACTATCTCCTGCTGAAAATGATCCTCAAATACAGCTGTCTGCTGGGATTGCTGCTCTGCGGCTGTCAAGCGGTGCTTCAGGTGTCGATATCACTGAATAAAGTGGAGCTGAGTGTTGGAGAGTCGAAATTCTTCACCTGCACAGCCATCGGTGAGCCGGTGAGTATAAACTGGTTCAGTCCTCAAGGAGAGCGTATCATCTCCAATCAGAGAGTGATCGTGCACACGGAGGGCGTCCGCTCCAGGCTCACCATCTACAACGCCATCATCGAGGACGCTGGGATATACCGATGCCAGGCTGTGGACGCCAAGGGACAGAGCCAGGAGGCCACAGTGGTGCTGGAGATTTACCAGAAGCTGACCTTCCGCGAGGTGAAGACACCGCAGGAGTTTCGTCAGAGCGAGGACGCCGAGGTCGTCTGTGACGTCATCAGTTCCCCGGTGCCGGCCGTGTCCTGGTTCTACAAGAACCGAGAAATCACGTCTGAGCCCAACAGCAGACTCCAGGTGCTTCCCAGCAACAACCTGCAGATCCTGCGAGTGAGTAAAGCCGACGAGGGAGTGTACCGCTGTGAGGCGCGAGTGGAGGCCCGAGGAGAAATCGATTTCAGGGACATCGTGGTGCTGGTCAACGTTCCTCCGGTTCTGTCCGTGCCGCAGCAGTCGTTCAACGCCACCGCAGACTACCAGGAGTCAGTGACGTTCACCTGCATCACGTCCGGCTCCCCCGACCCTCAGGTGACCTGGTACTGGAAGGGTCACGCGATCGAGCGATCGGAGCAGTACGTTCTCAACACGCTGGACGGAGGCAAAAGCACGCTGACGGTCAAAAACATCCGGCAGGGCGACGGCGGGCCGTACGTGTGCCGCGCGAGCAACAAGGCCGGGAGCTCCGAGAGCCAGCTCTTCCTCAAAGTGTTCGtccAGCCTCACATCACTCAGCTGAGGAACGTGACGGCCGTGGAGGGAAGCGCTGCTATGATCTCCTGCACGGCCGAAGGAGAACCGCTGCCAGAGATCTCCTGGAGGAGAGCCAGCGACGGACAGACCTTCACAGACGGAGATAAGAGTCAGGATGGCCGCGTGGAAGTGCGCGGACGCCACGGAAAATCCATGCTGACCATCAGCGGCGTTCGACTCTCAGACTGGGGCCGATTCGACTGTGAAGCTCTCAGCAGGATCGGGGGCCATCAGAAGAGCATGTTCCTGGATATCGAGTATGCGCCGAAGTTCCAGAGCAATCAAACCATCTTCTACTCGTGGGAGGGAAACCCGGTGAACATCAGCTGCGATGTGAAGTCCAATCCTCCGGCGACCATGCTGTGGAGACGAGAGCGCTTCACCATCTCCAGCCAGGGAACCAGCAACATCCGCATCCACAGCGCAGACGGACGCTCGCTTCTGGAGGTCACTCCGGTGTCCGACAGGGATTTCGGACGCTACAACTGCACAGCCAGAAACAACATCGGCGCTCGATACCAGGAGTTCATTTTAGCACAAGCAGACGTCCCGTCTCACCCGTACTCGGTTCGGCTCAGCGCCGTCTCTCAGCGGCTGGCCACCGTCTCCTTCATGAAGCCCGACTCTCACGGAGGAGTCCCCATCAGCTACTATCTCATCAACTACAGAGACACGAGCGTCCAGGACTGGAGGAGCATCAGATCACACGCCGTTCAGAtGGTCCTGGCTAACCTGGAGCCCAACACCACGTACGAGGTGCGAGTGGCGGCCGTCAACGGGAAGGGTCAGGGAGACTTCAGCCACACGGAAAGCTTCCAGACCTTACCCATCCGAGAGCCGAGTCCTCCGACGGTCCACGGTCAGAGAGGAGTCGGGAAGGCCTACAGACTCGGGCTCATCAAACAGGACGACGGCGGGATGCCCATCGTCGAGTACATCGTCAAGTATAAGACGgATAAAGAGGAGCAGTGGATGACGAAGCTGGTTCCGGGTGGGAATGACTTCGCTCTGCTGCAGCCTCTTCAGTGGAACACACGCTATAACGTGGAGATCACGGCTCGTAACGTCAAGGGCCTGTCGGAGCCCACCTTCTTCCAGTTCCTCACGCCGCAGAAACCAGACATCACAGCAGACTCCCTGTTCAGCGGCCTGGGCCTCGGCGCGGTGGTGGGGCTCGGCGTGGCGGCTCTTCTTCTGCTGCTGGTCCTGGTGGACATCAGCTGCTTCTTCCTGCGCCAGTGCGGCCTGCTCATGTGCATCACGCGCAAGCTCTGCAGCAAGAAGACCTCCACCAGCGGCAAGAGCAAAGAGCTGGAGGAGGGCAAAGCGGCGTATCTGGTTGATGGCTCGAAGGAGCCCATCGTGGAGATGAGAACTGAAGAAGAGAGAATTACTAACCAGGAGGACGGCAGTCCAGTGCACGAACCCAATGAGACGACTCCTCTGACAGAGCCAGAGAAGCTCCCGCTGAAGGAGGAGAACGGCAAGGAGGTGCTAAAGCCGGACTTGATCGAGATCAAGGTCCACACGGACAACAGCCTCCACACAAAACAGGACGACAGCAAAGCGTAATGGAGCCCGGAGTCCATCCCAGCCCGAACAAACTCAGACCAAATGTAGAAAGCAGAAGATATCATAAAAGAGGGGTAAAAGGGGTGtgtaaatatgttcaaatgCAAACAGGGACTGCGTTTTTTGTGATAAATCTACTGTCCTTTCTATTCACGATGACTCCGGCGCTACTTTTCGGTTGGCGTGTGCGTCTTGATGTTTCGGTTTGGCCATGGAGGATCTCAGAAATGAATTTCCAGACCTTTCTTCTACTTTCCAGGCATGTCGAGTCGATTTTTTTCTGCCCAGCGGGACATTGTGTTGTGTCTATAGTCTCGATGATTTCAGATTCTGGGCCTCTCATCTAAATGTGTTAGagactttttggtttttggCTTTTTCAATGTTTTGGTAGGACTTTtccatggggaaaaaaaaaaagatccagaTGGATTGGATTTCTTCTATTTTTCCAGGCATGGTGATGCGTCTCTATGTATGTCCAATTCCGAAGCTTGAAGACCTCAACGGTTCGTGTTTCCCATTTCGTCGTCATGAGTTTTAAACGCAGGGGTCACTTCGAAAAAGAAACCTGGCAAAACTTTGTAGTAAAGTGACTTTGTAGTTTGGATTTGCGCGACTGCCATGATGCCAGATGAAATGCTCTTATGAATTTATGTTGAttaatgtgtgcatgtgtgggtGTACGTGAGGATGAGTACGTGAATACACGAACAAAGATGCGAATGGTTGACGGACGCTTTATGAGCGCGTTATTCAGATAACTGATGTGAACATGGACgcagtttcattcattttctcagGAGGATTATCTTCGAACAGTTAGTCCATCATGATTAGTAGTTATGCTggaatatgtatttttctcgttttgtatcatttatatatcatttacattttcatgtatattattttctaatttattatgtgattttctaatttatttgtgattttgtgattttgttcaattttaatTGTCTCTATATAAAATTAGCAACGTTGactaaattgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtttataattaaGTCAGCATAGCTAATTGGTATATAGCGAGTTTAgttctatttagtttttataattctattatgtacttatgtaatttttatatttttatttgacattcgtttattttaatttctgcctttttatttcagtatttttgatGCTTTGACTTAAACGCATTTATGTTGCTTAGTTTCTAAAGCTGCATTGCTAATTCAGTTTGTCtttgtaatataaaatctatattttaatttaatgacatttttaattttagcttgtCTTTGTCGTTTTATTGCACGCTTTCGTTTAAGCGTATTAAAAATGCACCATCTTATACAgcatatgtattatttaatttagttttatttttagccatttttgaaattcaaggcaacatttaaattcaaagattcatttaatgtattttttccttttatttcaagtaacgaAGCGCACATGTCAGTCATTCGCGTCTGTATATTTGCGTAGCGTGAGATTCTGGTCGATGTTGTCGATAAAAGCCAACATTTGCCACCTGAGAGCCACTTTAGttcttattatatttgatatattttactatGGTTCACAGCTGTTTGTACATACATGGCGTGTGATGTAGTGTTCCTGTAAAACATTAGGAATGAAGTTCCAGATCAGGCCGAGTCTCTTCTGTGGAGTCATTAATGGAGCAGCAGGGCATTATCTACCAGATCTGTTTTGTAAAGTGTTTGTAAAGCCTGTATGATGTCAATGAAACCAGTCACACGAGTTGCAAAAAAAGATTGCGTTCATTTgtacttttgcatttttcagcGAAGACGTACAAACCATCTGGATAGAAAACATCTGTTGCTGTctttttgttgtcgttgttgttgttctccAGAACTCCACGTATGTGAAGTACCGCACTGCATTAAGCCAGAAATGACAAAATAGAtcaaatgttacattaattACGAGCCGTTTCCAGCTGCTTCTCCCTCGTTATTGAGTTTCATCCAGCGactcttttgtgtttcagtcTCATTCAGACGAGTTTCTCTTCTAATACTCTATGCATTCACAGAAAAGACTTCTGCTTTTTATGTTCTGGGTCGTTGAAGCTCTTTTTCTTCCGTGTTCGTTGCAGGTCTTTAGTTGATGGAGAACATCTGAGTCCTGATCTTACCACTGGAACACCtgttaaaactgtaatttaccgctgtaaataaatgtgtactAGTATAAGACGGTGCTTGTAAAATA

Function

GO:

id name namespace
GO:0007155 cell adhesion biological_process
GO:0016020 membrane cellular_component

KEGG:

id description
K06491 NCAM, CD56; neural cell adhesion molecule

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU401 lncRNA upstream 100866 1541322 ~ 1611176 (+) True G273
TU396 lncRNA upstream 226399 1485146 ~ 1485643 (+) True G270
TU321 lncRNA upstream 243911 1467485 ~ 1468131 (+) True G227
XR_006251676.1 lncRNA upstream 309427 1357834 ~ 1402615 (+) True LOC122350990
TU469 lncRNA downstream 12456 1905652 ~ 1905963 (+) True G312
TU476 lncRNA downstream 37461 1930657 ~ 1991767 (+) True G318
TU478 lncRNA downstream 38620 1931816 ~ 1933144 (+) True G319
TU480 lncRNA downstream 42977 1936173 ~ 1936647 (+) True G320
TU481 lncRNA downstream 42977 1936173 ~ 1951320 (+) False G320
XM_043237937.1 mRNA upstream 120112 1584612 ~ 1591930 (+) True LOC122343461
XM_043242418.1 mRNA upstream 128630 1574618 ~ 1583412 (+) True LOC122347221
XM_043245929.1 mRNA upstream 141154 1525107 ~ 1570888 (+) False runx1
XM_043239643.1 mRNA downstream 44254 1937450 ~ 1941621 (+) True LOC122345473
XM_043239653.1 mRNA downstream 44254 1937450 ~ 1941621 (+) False LOC122345473
XM_043239631.1 mRNA downstream 48865 1942061 ~ 1961643 (+) True gart
XM_043247501.1 mRNA downstream 260040 2153236 ~ 2171533 (+) True LOC122350785
XM_043247510.1 mRNA downstream 260040 2153236 ~ 2171533 (+) False LOC122350785
TU311 other upstream 270376 1439073 ~ 1441666 (+) True LOC122327253
TU309 other upstream 270603 1439073 ~ 1441439 (+) False LOC122327253
TU310 other upstream 270603 1439073 ~ 1441439 (+) False LOC122327253
TU190 other upstream 591321 1119719 ~ 1120721 (+) True G136
TU24 other upstream 1533842 177716 ~ 178200 (+) True G10
TU616 other downstream 292663 2185859 ~ 2192464 (+) True cyyr1
TU731 other downstream 590477 2483673 ~ 2485988 (+) False grtp1a
TU718 other downstream 618525 2511721 ~ 2513859 (+) False pcid2
TU696 other downstream 631329 2524525 ~ 2527244 (+) True G474
TU717 other downstream 701735 2594931 ~ 2596302 (+) True G482

Expression Profile