RNA id: AMCG00014409


Basic Information

Item Value
RNA id AMCG00014409
length 692
RNA type mRNA
GC content 0.52
exon number 7
gene id AMCG00014409
representative True

Chromosome Information

Item Value
chromosome id CM030128.1
NCBI id CM030128.1
chromosome length 42883965
location 13262379 ~ 13265549 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

GCAGTTTGAAGAATGATTAAGCATCATACCTTCTATTTGTGCCATCTTTGCATCTGCTCCCCCCACTTTAGCCGCCATACTTCCCGCTTGTGTTGACGCCAGGCAACCGATCAAACTCCTGGGACTACCCACAATTCCCTCTGTCTTTTCTCCATCTTAGCCGCCGTCATGAAGGTCGAGTTGTGCAGTTTTAGCGGATACAAAATCTACCCCGGCCATGGCCGGCGTTACGCCAGGATAGACGGAAAGGTTTTCCAGTTCCTGAATGCAAAGTGTGAGTCTGCATTCCTGTCCAAGAGGAATCCTCGCCAGATCAACTGGACCGTCCTGTACAGACGCAAGCACAAGAAGGGCCAGTCTGAAGAAGTGACGAAGAAGCGTACTCGCCGTGCGGTGAAGTTCCAGAGGGCCATCACTGGCGCCTCTCTGGCCGAGATCTTGGCCAAGAGGAACCAGAAGCCCGAGGTGCGCAAGGCTCAGCGGGAACAGGCCATCAGGGCTGCTAAAGAAGCCAAGAAGGCCAAGCAGGCAACCAAAAAGGTAGCTGCCCCAAGTACTAAGGCCCCTACCAAGACTGCACCTAAGCAGAAGATCGCCAAGCCCATGAAGGTCCAGGCACCACGTGTTGGCGGAAAACGCTAAAAAATTATGACTTGGTGATTAGTTGTTAATAAACTTTTGACTGTAAGAAA

Function

GO:

id name namespace
GO:0009790 embryo development biological_process
GO:0005840 ribosome cellular_component

KEGG:

id description
K02896 RP-L24e, RPL24; large subunit ribosomal protein L24e

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU87328 lncRNA downstream 166043 13087608 ~ 13096336 (-) False AMCG00014412
TU87308 lncRNA downstream 176034 13085363 ~ 13086345 (-) True G69896
TU87309 lncRNA downstream 176034 13085363 ~ 13086345 (-) False G69896
TU87311 lncRNA downstream 176034 13085363 ~ 13086345 (-) False G69896
TU87239 lncRNA downstream 291824 12970253 ~ 12970555 (-) True G69849
TU87397 lncRNA upstream 36375 13301924 ~ 13302379 (-) True G69950
TU87421 lncRNA upstream 38877 13304426 ~ 13375879 (-) True G69973
TU87498 lncRNA upstream 357566 13623115 ~ 13623381 (-) True G70034
TU87527 lncRNA upstream 429208 13694757 ~ 13696971 (-) True G70063
TU87569 lncRNA upstream 493677 13759226 ~ 13761420 (-) True G70091
AMCG00014410 mRNA downstream 1390 13251935 ~ 13260989 (-) True AMCG00014410
AMCG00014413 mRNA downstream 19727 13241826 ~ 13242652 (-) True AMCG00014413
AMCG00014408 mRNA downstream 24851 13208745 ~ 13237528 (-) True AMCG00014408
AMCG00014411 mRNA downstream 58572 13175211 ~ 13203807 (-) True AMCG00014411
AMCG00014412 mRNA downstream 128628 13087662 ~ 13133751 (-) True AMCG00014412
AMCG00014437 mRNA upstream 112113 13377662 ~ 13408576 (-) True AMCG00014437
AMCG00014434 mRNA upstream 177721 13443270 ~ 13473171 (-) True AMCG00014434
AMCG00014432 mRNA upstream 212799 13478348 ~ 13487613 (-) True AMCG00014432
AMCG00014438 mRNA upstream 233177 13498726 ~ 13527602 (-) True AMCG00014438
AMCG00014430 mRNA upstream 265646 13531195 ~ 13536369 (-) True AMCG00014430
TU87063 other downstream 1599886 11660021 ~ 11662493 (-) False AMCG00014374
TU86854 other downstream 2464232 10796716 ~ 10798147 (-) True G69537
TU86630 other downstream 3945212 9310451 ~ 9317167 (-) True AMCG00014328
TU86412 other downstream 4878155 8383285 ~ 8384224 (-) True G69156
TU86302 other downstream 5103789 8156229 ~ 8158590 (-) True AMCG00014298
TU90285 other upstream 15064190 28329739 ~ 28332482 (-) True G72236
TU90581 other upstream 16123741 29389290 ~ 29398305 (-) True G72477
TU91283 other upstream 18997618 32263167 ~ 32263427 (-) True G73047
TU91373 other upstream 19331913 32597462 ~ 32614806 (-) True G73127
TU91374 other upstream 19331913 32597462 ~ 32619149 (-) False G73127

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
zebrafish (Danio rerio) TCONS_00001413 False 1018 mRNA 0.51 6 NC_007112.7 6408 ~ 12027 (-)