RNA id: AMCG00014412


Basic Information

Item Value
RNA id AMCG00014412
length 3048
RNA type mRNA
GC content 0.43
exon number 16
gene id AMCG00014412
representative True

Chromosome Information

Item Value
chromosome id CM030128.1
NCBI id CM030128.1
chromosome length 42883965
location 13087608 ~ 13133751 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

CTGCTCTCTCTATCATTCAACTGTTTTTGCACAGTGAACAGAAGTCCTAAGTGAGTTGCTACCTTAGTGAAGTTGCACAGCATCCCTCACAGCCAGTGCAAGAGAATGTTCCCCAGGCTGCTTCTCTTCCTACTCGGTGGGATTTTACTGCTGAGCTATGGCACAACAAAGAGGCTACAAAGAGTTAAAAGACAGAATCTGAAGGTGCGTATCAATGCTACAGGGGACACCATTGTAATGAAGTTCGTGCGGCCAAACCCTGCCACCAAACTGGAAGGCTATATTCTGGGATATGGGAGCAGCATGTTTTCTAAGCAATTCATTCAACTACCTGAGAATGGGGAGCCATACGAAACAGAAATAGATGCAGAACCCAAATACTTAATAGCAGTGCAGCCAATTCCAACCAATGAGATAAAGAAGCAATGCACAGGTCAAGTCAATCTTGAAAAACCATTGCATCTTGTTATCGGATCTGTGACACCCACGACTGTCTTACTGTCCTGGGGCACTTTGCTAAAAACACCCTTTGAAGGAAGCATAATGAATGACTGTCTGGAAGATGGACACTACACTGTACGCTAcagggagaaagaaaggaatagGAAGTGGAACTATCAGACCTGCCCCACTAGTGACACTGTGATTGACAAACTTAAACCCAACACTCCCTATGAGTTTGGTGTCAGGCCTACCAAGGAGAAGGATGATGGATTGTGGAGCAAACCTGTCTTTCATAAGACCAATGTTGGAGgtgtaTCCAAGAAACCAATTGGGAAAGAACCTAAACTCTCTGAAGTCAAAGGACACCCAAATGGGAAGCCTCGGAAAAACACGCTGATTTATAATCCAAACCTCATCAAACCACCCCGTATAGGCTCGATTGCAAAGAGGCCTGTTTCACACAACAGGAAACCAAACACAGTAGATGACAAACACAGCAACAAAGacccAATACGGTCACCTATCAAGGACTCTGTTATGAAGAAACAGTTCCCTCCTGTGACTGCAAAGCCTGCCAAACAAGAGAGGAGACAGACAACAACGACGGCCGCTCCGGTAGTGAATGACGAGCCTTGCTCCATCACAAACTCCCTCAATTATTTCCCCGATGAGGAAGCCACTGAGCAGAACATCACCGCGCCGCCCAAGTACCCACCTTCCAACCTCACCGTGGTGACCGTGGAGGGCTGCCCTTCCTTCGTCATCCTGGACTGGGAGAAAGTGGACAATGACTCAGCTACAGAATATGAAATAATCTCTACGACAAAGGGTCCAAAGGGTGAAGAGAAATCCATCGTGGTCACCAACCAGACCCATTCTCCTGTGGAAAACCTGAAACCCAACAGCAGttaTGAATTTAGAGTTAAAGCCCTTAATGATCTTGGAGCTGGCCCAGTCAGTGATGCAGTGTCTTTCAGCACTGAATCAGCGGACCCCCGTGTGAGTGAAAACCTCTCAGGAAAAGATGCGATCTGGACACAGTTCCCATTCAAGTCTGACTCCTATTCCGAGTGCAATGGAAAGCAATACGTGAAGAGAACTTGGTATCGGAAGTTTGTGGGCGTCCAGCTGTGCAACTCCTTGAGATATAAAATTTATCTGAGTGACTCCCTCACAGGGAAGTATTATAACATCGGCGATCAGACGGGTTATGGGGAAGACCACTGCCAGTTTGTAGACTCCTTTTTAGATGGTCGTACGGGACTCGTGCTCAGGGGTGACCAACAACCCCTTAGAGAAGGTTTTTATCGATCTGTCCGCCAGGAACCGGTTCACTTTGGGCAAATAGGAGGCAACTCTCATATTAACTACGTGCCCTGGTATGAGTGTGGGACGACAATACCCGGAAAGTGGTAGAATCAACGAACTGGGGGGGGGGTCTAGTGACAAGTGTAGGATAAGGGGCAATGGGTATAATTGGTGGCGGTAAGGAGGTGAAGGGATCAGGGGTGGATTATCTTTTATTATAACTGCATCCCTGCCATGTAAACCTCAGCCTTTCTcatgtataaaatgtgtataagaTCTTATGCATCGAGAACTTTATTGagtgtatttgtaatatgtaatactTAAATCGCTACATCGTTATTTATCAAACgtgacaggaaaaacaaaaaaaacgtgaTCAAAAAAAGGCACATCAGAGGAATCGTGAAATGCATAagtaaatagaataaaatattggGAAGCTGGCTCCCTGAAACTATTTTGATaacttgtatattattatttatcaaaatgttgtattaaatgTTCCTTCTGGTGGTTTATCAGCAGTTTAGGGAATGGACTACGGTACAGTGCTTCAGTAGAACAGTTAATGTGTCTCATATTGACATGGATAGAGATCCCAGTAAGTGTTGCACActataaatgcatttcttacaACACATACCTACAGCAGAGTCGTAAAGATGGTCAAATTCACACATGGGCATGTCACGACACGCTCCCCTGAGACATGGGCACAGAAAAAGCACAGTGATGTACAATTCTGTCCATTTGGTAACTGTGGTGCTTAATGAAAAATTGCATTTAACCAAGTAATAATGGATTGATGATCATTATAGCAGACACTCAGTACTGGCGCATCAGTTGCATCTCCCATCCAGTATCAGAAGCCTTGTACCTACTTAAGTTTCTTCTTGCATCAGTGCCATTCAAGTTGGTGGCTGTAGCCCGAAGGATGTTACAATTGCAATTtgcacaatataaatgtatttatatgtatatggaGAGTAAGAAGCCTTATGAACAAAATCATGGAACAAACTATCCCTTAAACCTTGTGAACCACCTATCACTACAAGTGTACATTCTCCCATTTTTCACAAACTCTTTCAAAAACCAGAGCGTGGTATTTATATAGTCTAAATAAGAGGGGGGGGTTActgcattttatattgattaatgAAATGGAGACAGGATTACTTAATTGTCTGGGTTCTATGTTTTGTACAGAAACCAAAGCTCACAAGTGGTGGCTGcggtcatttttgttttttatggaaaatgtttataattgtatttttttgacCTGTA

Function

GO: NA

KEGG:

id description
K24477 ABI3BP; target of Nesh-SH3

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU87308 lncRNA downstream 1317 13085363 ~ 13086345 (-) True G69896
TU87309 lncRNA downstream 1317 13085363 ~ 13086345 (-) False G69896
TU87311 lncRNA downstream 1317 13085363 ~ 13086345 (-) False G69896
TU87239 lncRNA downstream 117107 12970253 ~ 12970555 (-) True G69849
TU87141 lncRNA downstream 1207206 11879097 ~ 11880456 (-) True G69759
TU87397 lncRNA upstream 168173 13301924 ~ 13302379 (-) True G69950
TU87421 lncRNA upstream 170675 13304426 ~ 13375879 (-) True G69973
TU87498 lncRNA upstream 489364 13623115 ~ 13623381 (-) True G70034
TU87527 lncRNA upstream 561006 13694757 ~ 13696971 (-) True G70063
TU87569 lncRNA upstream 625475 13759226 ~ 13761420 (-) True G70091
AMCG00014398 mRNA downstream 105167 12907404 ~ 12982495 (-) True AMCG00014398
AMCG00014397 mRNA downstream 212126 12850007 ~ 12875536 (-) True AMCG00014397
AMCG00014396 mRNA downstream 306824 12778483 ~ 12780838 (-) True AMCG00014396
AMCG00014395 mRNA downstream 347997 12729727 ~ 12739665 (-) True AMCG00014395
AMCG00014389 mRNA downstream 361018 12721742 ~ 12726644 (-) True AMCG00014389
AMCG00014411 mRNA upstream 41460 13175211 ~ 13203807 (-) True AMCG00014411
AMCG00014408 mRNA upstream 74994 13208745 ~ 13237528 (-) True AMCG00014408
AMCG00014413 mRNA upstream 108075 13241826 ~ 13242652 (-) True AMCG00014413
AMCG00014410 mRNA upstream 118184 13251935 ~ 13260989 (-) True AMCG00014410
AMCG00014409 mRNA upstream 128628 13262379 ~ 13265549 (-) True AMCG00014409
TU87063 other downstream 1425169 11660021 ~ 11662493 (-) False AMCG00014374
TU86854 other downstream 2289515 10796716 ~ 10798147 (-) True G69537
TU86630 other downstream 3770495 9310451 ~ 9317167 (-) True AMCG00014328
TU86412 other downstream 4703438 8383285 ~ 8384224 (-) True G69156
TU86302 other downstream 4929072 8156229 ~ 8158590 (-) True AMCG00014298
TU90285 other upstream 15195988 28329739 ~ 28332482 (-) True G72236
TU90581 other upstream 16255539 29389290 ~ 29398305 (-) True G72477
TU91283 other upstream 19129416 32263167 ~ 32263427 (-) True G73047
TU91373 other upstream 19463711 32597462 ~ 32614806 (-) True G73127
TU91374 other upstream 19463711 32597462 ~ 32619149 (-) False G73127

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
zebrafish (Danio rerio) TCONS_00040639 False 3641 mRNA 0.45 21 NC_007133.7 28446557 ~ 28482797 (+)
grasscarp (Ctenopharyngodon idella) TU103747 False 3300 lncRNA 0.40 5 CI01000015 6957602 ~ 6962415 (+)